Transcript Fusion
The transcript fusion data of TCGA were retrieved from the TumorFusions database.
List of the transcript fusions of the GESPs in each cancer type
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| Cancer Type | TCGA_barcode | Patient | Fusion_transcript | Gene_A | Gene_B | Chr_A | Chr_B | Strand_A | Strand_B | #_Discordant_Pairs | #_JSR | #_perfect_JSR | Evalue | Junction_A | Junction_B | Tier | Frame | TN | WGS_validation | Centrality |
| LUAD | TCGA-91-6848-01A | TCGA-91-6848 | PTK2|ANKRD11 | PTK2 | ANKRD11 | 8 | 16 | -1 | -1 | 6 | 4 | 3 | 1.6 | 142011224 | 89484776 | tier1 | 5UTR-5UTR | 13775 | NA | 0.38954 |
| LUAD | TCGA-91-6848-01A | TCGA-91-6848 | PTK2|CACNG8 | PTK2 | CACNG8 | 8 | 19 | -1 | 1 | 2 | 6 | 5 | 0.44 | 142010979 | 54481400 | tier2 | NA | 13776 | NA | 0.38643 |
| LUAD | TCGA-86-8359-01A | TCGA-86-8359 | PTK2|RNF139 | PTK2 | RNF139 | 8 | 8 | -1 | 1 | 21 | 20 | 19 | 0.003 | 141696731 | 125498072 | tier1 | Out-of-frame | 13781 | NA | 0.38765 |
| LUAD | TCGA-86-8279-01A | TCGA-86-8279 | PTK2|SLC45A4 | PTK2 | SLC45A4 | 8 | 8 | -1 | -1 | 2 | 2 | 2 | 1.3 | 142011224 | 142231864 | tier4 | 5UTR-CDS | 13782 | NA | 0.38674 |
| LUAD | TCGA-55-8511-01A | TCGA-55-8511 | PTK2|TRAPPC9 | PTK2 | TRAPPC9 | 8 | 8 | -1 | -1 | 261 | 141 | 110 | 0.79 | 142011224 | 140744445 | tier1 | 5UTR-CDS | 13783 | NA | 0.38623 |
| LUAD | TCGA-05-4420-01A | TCGA-05-4420 | PTK7|DLK2 | PTK7 | DLK2 | 6 | 6 | 1 | -1 | 5 | 4 | 4 | 0.089 | 43044305 | 43422212 | tier1 | In-frame | 13794 | non-validated | 0.36723 |
| LUAD | TCGA-97-A4LX-01A | TCGA-97-A4LX | PTPRA|TADA2A | PTPRA | TADA2A | 20 | 17 | 1 | 1 | 5 | 3 | 3 | 0.99 | 2854406 | 35771356 | tier4 | 5UTR-5UTR | 13847 | NA | 0.36619 |
| LUAD | TCGA-38-6178-01A | TCGA-38-6178 | PTPRJ|FCER1G | PTPRJ | FCER1G | 11 | 1 | 1 | 1 | 9 | 8 | 7 | 0.046 | 48134535 | 161187776 | tier1 | In-frame | 13869 | NA | 0.37876 |
| LUAD | TCGA-44-A47B-01A | TCGA-44-A47B | PTPRM|KIAA1468 | PTPRM | KIAA1468 | 18 | 18 | 1 | 1 | 2 | 1 | 1 | 1 | 7955412 | 59911997 | tier2 | Out-of-frame | 13901 | NA | 0 |
| LUAD | TCGA-55-8206-01A | TCGA-55-8206 | PTPRT|EXD2 | PTPRT | EXD2 | 20 | 14 | -1 | 1 | 2 | 2 | 2 | 0.01 | 41385102 | 69695533 | tier2 | CDS-5UTR | 13920 | NA | 0 |
| LUAD | TCGA-78-7153-01A | TCGA-78-7153 | PTPRU|C8orf84 | PTPRU | C8orf84 | 1 | 8 | 1 | -1 | 4 | 4 | 3 | 2.6 | 29563229 | 73984105 | tier1 | In-frame | 13922 | NA | 0 |
| LUAD | TCGA-38-4631-01A | TCGA-38-4631 | PUM1|NKAIN1 | PUM1 | NKAIN1 | 1 | 1 | -1 | -1 | 50 | 41 | 37 | 0.5 | 31532051 | 31661034 | tier1 | In-frame | 13944 | NA | 0 |
| LUAD | TCGA-62-A46V-01A | TCGA-62-A46V | PVRL2|ZMAT2 | PVRL2 | ZMAT2 | 19 | 5 | 1 | 1 | 4 | 5 | 5 | 0.17 | 45377735 | 140083503 | tier1 | Out-of-frame | 13975 | NA | 0 |
| LUAD | TCGA-49-AARQ-01A | TCGA-49-AARQ | PVRL4|PFDN2 | PVRL4 | PFDN2 | 1 | 1 | -1 | -1 | 21 | 23 | 23 | 0.29 | 161059008 | 161072165 | tier1 | Out-of-frame | 13977 | NA | 0 |
| LUAD | TCGA-44-7660-01A | TCGA-44-7660 | RAB14|STOM | RAB14 | STOM | 9 | 9 | -1 | -1 | 10 | 13 | 11 | 0.44 | 123963917 | 124111601 | tier1 | 5UTR-CDS | 14049 | NA | 0 |
| LUAD | TCGA-86-8358-01A | TCGA-86-8358 | RAB39|TECTA | RAB39 | TECTA | 11 | 11 | 1 | 1 | 6 | 3 | 3 | 0.48 | 107799521 | 121058541 | tier1 | In-frame | 14078 | NA | 0 |
| LUAD | TCGA-NJ-A55A-01A | TCGA-NJ-A55A | RAGE|CINP | RAGE | CINP | 14 | 14 | -1 | -1 | 2 | 1 | 1 | 0.25 | 102771299 | 102825924 | tier3 | In-frame | 14193 | NA | 0 |
| LUAD | TCGA-93-8067-01A | TCGA-93-8067 | RAI1|MRGPRF | RAI1 | MRGPRF | 17 | 11 | 1 | -1 | 2 | 13 | 11 | 0.051 | 17585107 | 68773729 | tier3 | 5UTR-CDS | 14202 | NA | 0 |
| LUAD | TCGA-L9-A7SV-01A | TCGA-L9-A7SV | RALGAPB|TMC2 | RALGAPB | TMC2 | 20 | 20 | 1 | 1 | 2 | 1 | 1 | 0.98 | 37191340 | 2539102 | tier2 | In-frame | 14232 | NA | 0 |
| LUAD | TCGA-MP-A4T4-01A | TCGA-MP-A4T4 | RANBP10|SLC12A4 | RANBP10 | SLC12A4 | 16 | 16 | -1 | -1 | 3 | 1 | 1 | 3.1 | 67778191 | 67986328 | tier3 | Out-of-frame | 14251 | NA | 0 |
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