Transcript Fusion
The transcript fusion data of TCGA were retrieved from the TumorFusions database.
List of the transcript fusions of the GESPs in each cancer type
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| Cancer Type | TCGA_barcode | Patient | Fusion_transcript | Gene_A | Gene_B | Chr_A | Chr_B | Strand_A | Strand_B | #_Discordant_Pairs | #_JSR | #_perfect_JSR | Evalue | Junction_A | Junction_B | Tier | Frame | TN | WGS_validation | Centrality |
| LUAD | TCGA-05-4434-01A | TCGA-05-4434 | PI4KA|ZNF274 | PI4KA | ZNF274 | 22 | 19 | -1 | 1 | 5 | 6 | 6 | 0.056 | 21101871 | 58718087 | tier1 | Out-of-frame | 12786 | NA | 0.37266 |
| LUAD | TCGA-44-5643-01A | TCGA-44-5643 | PID1|DNER | PID1 | DNER | 2 | 2 | -1 | -1 | 6 | 5 | 5 | 0.091 | 230020534 | 230456604 | tier1 | In-frame | 12807 | NA | 0.3545 |
| LUAD | TCGA-73-A9RS-01A | TCGA-73-A9RS | PIK3CB|GRM7 | PIK3CB | GRM7 | 3 | 3 | -1 | 1 | 7 | 7 | 7 | 0.7 | 138474596 | 7620109 | tier1 | Out-of-frame | 12836 | NA | 0.38184 |
| LUAD | TCGA-78-7154-01A | TCGA-78-7154 | PILRB|IMMP2L | PILRB | IMMP2L | 7 | 7 | 1 | -1 | 5 | 5 | 2 | 2.4 | 99943591 | 111161505 | tier1 | 5UTR-5UTR | 12855 | NA | 0.3588 |
| LUAD | TCGA-86-8673-01A | TCGA-86-8673 | PIP5K1A|C1orf56 | PIP5K1A | C1orf56 | 1 | 1 | 1 | 1 | 6 | 7 | 7 | 3.4 | 151199876 | 151022914 | tier1 | In-frame | 12870 | NA | 0 |
| LUAD | TCGA-NJ-A4YQ-01A | TCGA-NJ-A4YQ | PLAUR|ZNF576 | PLAUR | ZNF576 | 19 | 19 | -1 | 1 | 4 | 3 | 2 | 0.49 | 44169468 | 44102983 | tier1 | In-frame | 12952 | NA | 0.37779 |
| LUAD | TCGA-MP-A4SW-01A | TCGA-MP-A4SW | PLEKHG5|TNFRSF8 | PLEKHG5 | TNFRSF8 | 1 | 1 | -1 | 1 | 7 | 5 | 3 | 0.2 | 6556553 | 12198286 | tier1 | In-frame | 13026 | NA | 0.37253 |
| LUAD | TCGA-55-A493-01A | TCGA-55-A493 | PLXNA3|TKTL1 | PLXNA3 | TKTL1 | X | X | 1 | 1 | 10 | 7 | 7 | 0.65 | 153698954 | 153533656 | tier1 | In-frame | 13067 | NA | 0.34801 |
| LUAD | TCGA-55-7913-01B | TCGA-55-7913 | PLXNB2|SUPT16H | PLXNB2 | SUPT16H | 22 | 14 | -1 | -1 | 2 | 15 | 1 | 0.31 | 50713408 | 21829491 | tier3 | 3UTR-CDS | 13075 | NA | 0.38155 |
| LUAD | TCGA-75-7031-01A | TCGA-75-7031 | PLXNB2|UTRN | PLXNB2 | UTRN | 22 | 6 | -1 | 1 | 2 | 7 | 6 | 0.23 | 50713408 | 144665237 | tier3 | NA | 13077 | NA | 0.37799 |
| LUAD | TCGA-64-5779-01A | TCGA-64-5779 | POFUT2|LRP2 | POFUT2 | LRP2 | 21 | 2 | -1 | -1 | 3 | 1 | 1 | 0.78 | 46707656 | 170151220 | tier3 | Out-of-frame | 13133 | NA | 0.37236 |
| LUAD | TCGA-44-A47G-01A | TCGA-44-A47G | POLB|UNC5D | POLB | UNC5D | 8 | 8 | 1 | 1 | 3 | 2 | 2 | 0.12 | 42196203 | 35606045 | tier1 | Out-of-frame | 13146 | NA | 0.3757 |
| LUAD | TCGA-MN-A4N1-01A | TCGA-MN-A4N1 | POLD3|ODZ4 | POLD3 | ODZ4 | 11 | 11 | 1 | -1 | 10 | 16 | 15 | 0.045 | 74331134 | 78781054 | tier1 | CDS-5UTR | 13149 | NA | 0.36133 |
| LUAD | TCGA-50-5941-01A | TCGA-50-5941 | POMT1|NUP214 | POMT1 | NUP214 | 9 | 9 | 1 | 1 | 11 | 4 | 4 | 0.9 | 134378460 | 134090599 | tier1 | 5UTR-CDS | 13185 | NA | 0.35641 |
| LUAD | TCGA-55-A48Y-01A | TCGA-55-A48Y | PPAP2A|ANKRD55 | PPAP2A | ANKRD55 | 5 | 5 | -1 | -1 | 13 | 25 | 24 | 0.49 | 54737679 | 55422933 | tier1 | In-frame | 13206 | NA | 0.3615 |
| LUAD | TCGA-NJ-A4YF-01A | TCGA-NJ-A4YF | PPM1B|ABCG8 | PPM1B | ABCG8 | 2 | 2 | 1 | 1 | 3 | 3 | 3 | 1.3 | 44445676 | 44071646 | tier1 | In-frame | 13306 | NA | 0.37124 |
| LUAD | TCGA-05-4427-01A | TCGA-05-4427 | PPP2CA|CDH3 | PPP2CA | CDH3 | 5 | 16 | -1 | 1 | 25 | 5 | 5 | 2.1 | 133561451 | 68710288 | tier1 | Out-of-frame | 13384 | NA | 0.38118 |
| LUAD | TCGA-49-AARE-01A | TCGA-49-AARE | PRCC|RHBG | PRCC | RHBG | 1 | 1 | 1 | 1 | 10 | 21 | 16 | 1.9 | 156738031 | 156352539 | tier1 | Out-of-frame | 13487 | NA | 0.34034 |
| LUAD | TCGA-05-5429-01A | TCGA-05-5429 | PRKCA|PITPNC1 | PRKCA | PITPNC1 | 17 | 17 | 1 | 1 | 4 | 5 | 2 | 0.42 | 64492401 | 65528918 | tier1 | In-frame | 13545 | non-validated | 0.38336 |
| LUAD | TCGA-38-6178-01A | TCGA-38-6178 | PTDSS1|PTK2 | PTDSS1 | PTK2 | 8 | 8 | 1 | -1 | 3 | 2 | 1 | 3.2 | 97321850 | 141840625 | tier3 | In-frame | 13752 | NA | 0.38533 |
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