Transcript Fusion
The transcript fusion data of TCGA were retrieved from the TumorFusions database.
List of the transcript fusions of the GESPs in each cancer type
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| Cancer Type | TCGA_barcode | Patient | Fusion_transcript | Gene_A | Gene_B | Chr_A | Chr_B | Strand_A | Strand_B | #_Discordant_Pairs | #_JSR | #_perfect_JSR | Evalue | Junction_A | Junction_B | Tier | Frame | TN | WGS_validation | Centrality |
| LUAD | TCGA-69-7760-01A | TCGA-69-7760 | NUDT4|ADD1 | NUDT4 | ADD1 | 12 | 4 | 1 | 1 | 4 | 15 | 11 | 2.9 | 93772197 | 2877623 | tier1 | CDS-5UTR | 11870 | NA | 0.3698 |
| LUAD | TCGA-38-4630-01A | TCGA-38-4630 | NUP210|FBLN2 | NUP210 | FBLN2 | 3 | 3 | -1 | 1 | 13 | 10 | 7 | 1.1 | 13393379 | 13679062 | tier1 | Out-of-frame | 11933 | non-validated | 0.36904 |
| LUAD | TCGA-67-3774-01A | TCGA-67-3774 | ODZ4|GRIK4 | ODZ4 | GRIK4 | 11 | 11 | -1 | 1 | 2 | 2 | 2 | 0.22 | 78775783 | 120811056 | tier3 | Out-of-frame | 12011 | NA | 0.36654 |
| LUAD | TCGA-44-3918-01B | TCGA-44-3918 | OSMR|NCKAP5 | OSMR | NCKAP5 | 5 | 2 | 1 | -1 | 4 | 7 | 7 | 5.2 | 38886292 | 133554302 | tier1 | Out-of-frame | 12106 | non-validated | 0.35854 |
| LUAD | TCGA-69-8255-01A | TCGA-69-8255 | P4HB|TPT1 | P4HB | TPT1 | 17 | 13 | -1 | -1 | 2 | 1 | 1 | 1.2 | 79801410 | 45915293 | tier3 | 3UTR-5UTR | 12155 | NA | 0.36745 |
| LUAD | TCGA-49-AARQ-01A | TCGA-49-AARQ | PACSIN2|TTLL1 | PACSIN2 | TTLL1 | 22 | 22 | -1 | -1 | 62 | 49 | 45 | 0.68 | 43411027 | 43447893 | tier1 | 5UTR-CDS | 12179 | NA | 0.36092 |
| LUAD | TCGA-50-6597-01A | TCGA-50-6597 | PACSIN2|TTLL1 | PACSIN2 | TTLL1 | 22 | 22 | -1 | -1 | 57 | 68 | 59 | 0.68 | 43308027 | 43435911 | tier1 | Out-of-frame | 12180 | non-validated | 0.36092 |
| LUAD | TCGA-78-7161-01A | TCGA-78-7161 | PAK1|CNIH4 | PAK1 | CNIH4 | 11 | 1 | -1 | 1 | 44 | 16 | 16 | 0.55 | 77103376 | 224553581 | tier1 | Out-of-frame | 12200 | NA | 0.37326 |
| LUAD | TCGA-99-8032-01A | TCGA-99-8032 | PBRM1|IGSF11 | PBRM1 | IGSF11 | 3 | 3 | -1 | -1 | 7 | 4 | 3 | 0.078 | 52712516 | 118647563 | tier1 | Out-of-frame | 12335 | NA | 0.3616 |
| LUAD | TCGA-86-8054-01A | TCGA-86-8054 | PCDH7|AC021860.1 | PCDH7 | AC021860.1 | 4 | 4 | 1 | -1 | 4 | 7 | 5 | 1.3 | 30726218 | 38629723 | tier2 | CDS-5UTR | 12387 | NA | 0.34716 |
| LUAD | TCGA-95-A4VN-01A | TCGA-95-A4VN | PDE7A|NCAM2 | PDE7A | NCAM2 | 8 | 21 | -1 | 1 | 6 | 1 | 1 | 0.31 | 66750709 | 22582860 | tier3 | NA | 12509 | NA | 0.35767 |
| LUAD | TCGA-50-5941-01A | TCGA-50-5941 | PDE9A|ABCG1 | PDE9A | ABCG1 | 21 | 21 | 1 | 1 | 16 | 7 | 7 | 0.021 | 44073993 | 43645781 | tier1 | In-frame | 12519 | NA | 0.35672 |
| LUAD | TCGA-86-A4D0-01A | TCGA-86-A4D0 | PDGFC|G3BP2 | PDGFC | G3BP2 | 4 | 4 | -1 | -1 | 2 | 1 | 1 | 0.21 | 157891938 | 76587233 | tier3 | CDS-5UTR | 12527 | NA | 0.37845 |
| LUAD | TCGA-78-7149-01A | TCGA-78-7149 | PDGFRB|FAR1 | PDGFRB | FAR1 | 5 | 11 | -1 | 1 | 2 | 10 | 8 | 0.34 | 149493405 | 13744912 | tier4 | NA | 12529 | NA | 0.38501 |
| LUAD | TCGA-69-7978-01A | TCGA-69-7978 | PDLIM1|SORBS1 | PDLIM1 | SORBS1 | 10 | 10 | -1 | -1 | 29 | 36 | 34 | 0.11 | 97031390 | 97081778 | tier1 | Out-of-frame | 12551 | NA | 0.38115 |
| LUAD | TCGA-69-A59K-01A | TCGA-69-A59K | PEPD|SKAP1 | PEPD | SKAP1 | 19 | 17 | -1 | -1 | 17 | 20 | 13 | 0.11 | 33953901 | 46214699 | tier1 | Out-of-frame | 12612 | NA | 0.37843 |
| LUAD | TCGA-62-A46Y-01A | TCGA-62-A46Y | PHC2|CSMD2 | PHC2 | CSMD2 | 1 | 1 | -1 | -1 | 2 | 2 | 2 | 0.16 | 33895782 | 33992858 | tier2 | 5UTR-CDS | 12684 | NA | 0.36732 |
| LUAD | TCGA-38-4630-01A | TCGA-38-4630 | PHF12|PLXDC1 | PHF12 | PLXDC1 | 17 | 17 | -1 | -1 | 47 | 23 | 20 | 3.7 | 27277083 | 37296085 | tier1 | Out-of-frame | 12701 | validated | 0.36584 |
| LUAD | TCGA-05-4433-01A | TCGA-05-4433 | PHF12|TMEM97 | PHF12 | TMEM97 | 17 | 17 | -1 | 1 | 3 | 1 | 1 | 0.43 | 27277083 | 26652529 | tier2 | Out-of-frame | 12703 | NA | 0.3632 |
| LUAD | TCGA-69-7979-01A | TCGA-69-7979 | PHF21A|PACSIN3 | PHF21A | PACSIN3 | 11 | 11 | -1 | -1 | 3 | 9 | 9 | 0.043 | 46098305 | 47204620 | tier1 | CDS-5UTR | 12729 | NA | 0.37322 |
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