Transcript Fusion
The transcript fusion data of TCGA were retrieved from the TumorFusions database.
List of the transcript fusions of the GESPs in each cancer type
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| Cancer Type | TCGA_barcode | Patient | Fusion_transcript | Gene_A | Gene_B | Chr_A | Chr_B | Strand_A | Strand_B | #_Discordant_Pairs | #_JSR | #_perfect_JSR | Evalue | Junction_A | Junction_B | Tier | Frame | TN | WGS_validation | Centrality |
| LUAD | TCGA-55-6712-01A | TCGA-55-6712 | MTM1|VBP1 | MTM1 | VBP1 | X | X | 1 | 1 | 24 | 4 | 2 | 0.75 | 149787612 | 154448460 | tier1 | In-frame | 10807 | NA | 0.35531 |
| LUAD | TCGA-62-A46U-01A | TCGA-62-A46U | MTMR3|SCNN1B | MTMR3 | SCNN1B | 22 | 16 | 1 | 1 | 13 | 8 | 6 | 0.82 | 30367051 | 23359913 | tier1 | CDS-5UTR | 10827 | NA | 0.36306 |
| LUAD | TCGA-91-A4BD-01A | TCGA-91-A4BD | MUC1|PKLR | MUC1 | PKLR | 1 | 1 | -1 | -1 | 3 | 3 | 3 | 0.21 | 155161974 | 155263381 | tier1 | In-frame | 10853 | NA | 0.3703 |
| LUAD | TCGA-44-6776-01A | TCGA-44-6776 | MUC1|SIAE | MUC1 | SIAE | 1 | 11 | -1 | -1 | 2 | 37 | 36 | 0.38 | 155158302 | 124543777 | tier3 | 3UTR-5UTR | 10854 | NA | 0.36823 |
| LUAD | TCGA-44-A4SS-01A | TCGA-44-A4SS | MYH9|CACNG2 | MYH9 | CACNG2 | 22 | 22 | -1 | -1 | 26 | 9 | 9 | 0.015 | 36783852 | 36983595 | tier1 | 5UTR-CDS | 10898 | NA | 0.38129 |
| LUAD | TCGA-64-1678-01A | TCGA-64-1678 | MYH9|ORAOV1 | MYH9 | ORAOV1 | 22 | 11 | -1 | -1 | 57 | 31 | 28 | 2.3 | 36744949 | 69488089 | tier1 | Out-of-frame | 10911 | non-validated | 0.37765 |
| LUAD | TCGA-55-8299-01A | TCGA-55-8299 | MYH9|TXN2 | MYH9 | TXN2 | 22 | 22 | -1 | -1 | 7 | 9 | 9 | 0.003 | 36718474 | 36876884 | tier1 | In-frame | 10916 | non-validated | 0.37799 |
| LUAD | TCGA-05-4396-01A | TCGA-05-4396 | MYO10|DNAH5 | MYO10 | DNAH5 | 5 | 5 | -1 | -1 | 5 | 2 | 2 | 0.37 | 16877718 | 13931353 | tier1 | In-frame | 10940 | non-validated | 0.37181 |
| LUAD | TCGA-05-4424-01A | TCGA-05-4424 | MYO10|ST6GALNAC3 | MYO10 | ST6GALNAC3 | 5 | 1 | -1 | 1 | 5 | 4 | 4 | 0.013 | 16935897 | 76779490 | tier1 | In-frame | 10945 | NA | 0.36962 |
| LUAD | TCGA-05-4244-01A | TCGA-05-4244 | MYO6|SENP6 | MYO6 | SENP6 | 6 | 6 | 1 | 1 | 8 | 8 | 8 | 0.004 | 76459140 | 76385151 | tier1 | 5UTR-CDS | 11000 | NA | 0.3713 |
| LUAD | TCGA-44-4112-01A | TCGA-44-4112 | MYO6|SENP6 | MYO6 | SENP6 | 6 | 6 | 1 | 1 | 5 | 2 | 2 | 0.004 | 76459140 | 76405520 | tier1 | 5UTR-CDS | 11001 | non-validated | 0.3713 |
| LUAD | TCGA-55-7576-01A | TCGA-55-7576 | NAV2|CNTN5 | NAV2 | CNTN5 | 11 | 11 | 1 | 1 | 34 | 9 | 9 | 0.71 | 19890543 | 100126492 | tier1 | In-frame | 11106 | NA | 0.36969 |
| LUAD | TCGA-55-8301-01A | TCGA-55-8301 | NCOR2|SCARB1 | NCOR2 | SCARB1 | 12 | 12 | -1 | -1 | 4 | 10 | 10 | 0.08 | 125020111 | 125284788 | tier1 | 5UTR-CDS | 11253 | NA | 0.37966 |
| LUAD | TCGA-78-7152-01A | TCGA-78-7152 | NCOR2|SCARB1 | NCOR2 | SCARB1 | 12 | 12 | -1 | -1 | 18 | 37 | 36 | 0.08 | 125051854 | 125302253 | tier1 | NA | 11254 | NA | 0.37966 |
| LUAD | TCGA-97-A4M3-01A | TCGA-97-A4M3 | NCSTN|SPRR2G | NCSTN | SPRR2G | 1 | 1 | 1 | -1 | 753 | 688 | 629 | 0.73 | 160324080 | 153122607 | tier1 | CDS-5UTR | 11267 | NA | 0.35932 |
| LUAD | TCGA-05-4426-01A | TCGA-05-4426 | NIPBL|MYO10 | NIPBL | MYO10 | 5 | 5 | 1 | -1 | 16 | 21 | 15 | 0.25 | 37010327 | 16877816 | tier1 | In-frame | 11561 | NA | 0.37087 |
| LUAD | TCGA-50-5946-01A | TCGA-50-5946 | NIPBL|SLC1A3 | NIPBL | SLC1A3 | 5 | 5 | 1 | 1 | 40 | 19 | 18 | 5.4 | 36877280 | 36671131 | tier1 | 5UTR-CDS | 11564 | NA | 0.35231 |
| LUAD | TCGA-62-8394-01A | TCGA-62-8394 | NKAIN1|PFAS | NKAIN1 | PFAS | 1 | 17 | -1 | 1 | 2 | 1 | 1 | 0.14 | 31712341 | 8157484 | tier2 | Out-of-frame | 11580 | NA | 0.35107 |
| LUAD | TCGA-49-4505-01A | TCGA-49-4505 | NSD1|UNC5A | NSD1 | UNC5A | 5 | 5 | 1 | 1 | 2 | 2 | 1 | 0.5 | 176563031 | 176289625 | tier3 | Out-of-frame | 11782 | NA | 0.38107 |
| LUAD | TCGA-44-7670-01A | TCGA-44-7670 | NSUN4|BMPR1B | NSUN4 | BMPR1B | 1 | 4 | 1 | 1 | 3 | 1 | 1 | 1.5 | 46810816 | 96044961 | tier3 | Out-of-frame | 11814 | NA | 0.38109 |
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