Transcript Fusion
The transcript fusion data of TCGA were retrieved from the TumorFusions database.
List of the transcript fusions of the GESPs in each cancer type
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| Cancer Type | TCGA_barcode | Patient | Fusion_transcript | Gene_A | Gene_B | Chr_A | Chr_B | Strand_A | Strand_B | #_Discordant_Pairs | #_JSR | #_perfect_JSR | Evalue | Junction_A | Junction_B | Tier | Frame | TN | WGS_validation | Centrality |
| LUAD | TCGA-75-6205-01A | TCGA-75-6205 | LRRN4|MCM8 | LRRN4 | MCM8 | 20 | 20 | -1 | 1 | 6 | 4 | 4 | 100 | 6031425 | 5974152 | tier1 | In-frame | 9617 | NA | 0.36683 |
| LUAD | TCGA-55-A48Y-01A | TCGA-55-A48Y | MAP4|SPINK8 | MAP4 | SPINK8 | 3 | 3 | -1 | -1 | 8 | 3 | 3 | 1.7 | 48040128 | 48351436 | tier1 | Out-of-frame | 9898 | NA | 0.36249 |
| LUAD | TCGA-99-8028-01A | TCGA-99-8028 | MAP4|SPINK8 | MAP4 | SPINK8 | 3 | 3 | -1 | -1 | 4 | 2 | 2 | 1.7 | 48130263 | 48351436 | tier1 | 5UTR-CDS | 9899 | NA | 0.36249 |
| LUAD | TCGA-53-7624-01A | TCGA-53-7624 | MAPKAP1|UHRF1 | MAPKAP1 | UHRF1 | 9 | 19 | -1 | 1 | 2 | 2 | 2 | 1.8 | 128419930 | 4929234 | tier2 | In-frame | 9960 | NA | 0.37371 |
| LUAD | TCGA-67-3774-01A | TCGA-67-3774 | MARK2|DLAT | MARK2 | DLAT | 11 | 11 | 1 | 1 | 23 | 17 | 15 | 0.75 | 63607032 | 111907997 | tier1 | Out-of-frame | 10001 | NA | 0.38547 |
| LUAD | TCGA-62-A46V-01A | TCGA-62-A46V | MARVELD2|WDR19 | MARVELD2 | WDR19 | 5 | 4 | 1 | 1 | 27 | 27 | 27 | 0.2 | 68716358 | 39287107 | tier1 | CDS-3UTR | 10014 | NA | 0.35205 |
| LUAD | TCGA-44-7662-01A | TCGA-44-7662 | MET|WNT2 | MET | WNT2 | 7 | 7 | 1 | -1 | 288 | 281 | 267 | 0.69 | 116417523 | 116937930 | tier1 | Out-of-frame | 10260 | NA | 0.37772 |
| LUAD | TCGA-44-4112-01A | TCGA-44-4112 | MIB1|SNRPD1 | MIB1 | SNRPD1 | 18 | 18 | 1 | 1 | 5 | 3 | 3 | 0.16 | 19359646 | 19202686 | tier1 | In-frame | 10335 | non-validated | 0.37186 |
| LUAD | TCGA-86-7955-01A | TCGA-86-7955 | MICALL2|SDK1 | MICALL2 | SDK1 | 7 | 7 | -1 | 1 | 3 | 2 | 2 | 1.2 | 1498820 | 3658712 | tier1 | Out-of-frame | 10353 | NA | 0.34949 |
| LUAD | TCGA-69-7979-01A | TCGA-69-7979 | MKL1|NTNG1 | MKL1 | NTNG1 | 22 | 1 | -1 | 1 | 6 | 3 | 3 | 2.6 | 41032482 | 107937776 | tier1 | 5UTR-CDS | 10403 | NA | 0.36424 |
| LUAD | TCGA-97-8174-01A | TCGA-97-8174 | MLL|FYN | MLL | FYN | 11 | 6 | 1 | -1 | 14 | 19 | 18 | 0.004 | 118382740 | 112025305 | tier1 | Out-of-frame | 10449 | NA | 0.39684 |
| LUAD | TCGA-O1-A52J-01A | TCGA-O1-A52J | MLLT10|KCNJ6 | MLLT10 | KCNJ6 | 10 | 21 | 1 | -1 | 7 | 3 | 3 | 0.011 | 21827841 | 39087434 | tier1 | Out-of-frame | 10506 | NA | 0.36778 |
| LUAD | TCGA-55-7911-01A | TCGA-55-7911 | MMP28|KCNJ12 | MMP28 | KCNJ12 | 17 | 17 | -1 | 1 | 4 | 4 | 2 | 0.21 | 34105892 | 21311831 | tier1 | CDS-5UTR | 10550 | NA | 0.36533 |
| LUAD | TCGA-44-7660-01A | TCGA-44-7660 | MORF4L2|GLRA4 | MORF4L2 | GLRA4 | X | X | -1 | -1 | 116 | 126 | 115 | 0.61 | 102933427 | 102974199 | tier1 | 5UTR-CDS | 10577 | NA | 0.3581 |
| LUAD | TCGA-50-5946-01A | TCGA-50-5946 | MPP5|GPHN | MPP5 | GPHN | 14 | 14 | 1 | 1 | 50 | 29 | 22 | 0.24 | 67746254 | 67635650 | tier1 | In-frame | 10610 | NA | 0.36903 |
| LUAD | TCGA-MP-A4SW-01A | TCGA-MP-A4SW | MPP5|GPHN | MPP5 | GPHN | 14 | 14 | 1 | 1 | 3 | 2 | 2 | 0.24 | 67759436 | 67646295 | tier1 | In-frame | 10617 | NA | 0.36903 |
| LUAD | TCGA-44-A4SU-01A | TCGA-44-A4SU | MPP7|RNF169 | MPP7 | RNF169 | 10 | 11 | -1 | 1 | 2 | 2 | 2 | 1.4 | 28491082 | 74546591 | tier2 | In-frame | 10623 | NA | 0.35332 |
| LUAD | TCGA-91-6831-01A | TCGA-91-6831 | MRPL21|LRP5 | MRPL21 | LRP5 | 11 | 11 | -1 | 1 | 3 | 3 | 3 | 2.8 | 68663983 | 68115315 | tier1 | Out-of-frame | 10649 | NA | 0.37153 |
| LUAD | TCGA-67-3774-01A | TCGA-67-3774 | MRPS22|SLC9A9 | MRPS22 | SLC9A9 | 3 | 3 | 1 | -1 | 6 | 9 | 9 | 0.69 | 139071634 | 143412149 | tier1 | In-frame | 10676 | NA | 0.34443 |
| LUAD | TCGA-95-7039-01A | TCGA-95-7039 | MST1R|FNDC3B | MST1R | FNDC3B | 3 | 3 | -1 | 1 | 47 | 25 | 21 | 4.5 | 49932600 | 171904502 | tier1 | In-frame | 10758 | NA | 0.38691 |
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