Transcript Fusion
The transcript fusion data of TCGA were retrieved from the TumorFusions database.
List of the transcript fusions of the GESPs in each cancer type
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| Cancer Type | TCGA_barcode | Patient | Fusion_transcript | Gene_A | Gene_B | Chr_A | Chr_B | Strand_A | Strand_B | #_Discordant_Pairs | #_JSR | #_perfect_JSR | Evalue | Junction_A | Junction_B | Tier | Frame | TN | WGS_validation | Centrality |
| LUAD | TCGA-44-7671-01A | TCGA-44-7671 | KIF13A|PTPRK | KIF13A | PTPRK | 6 | 6 | -1 | -1 | 3 | 3 | 3 | 0.01 | 17825999 | 128718833 | tier1 | In-frame | 8932 | NA | 0.37706 |
| LUAD | TCGA-55-A493-01A | TCGA-55-A493 | KIF21A|SLC2A13 | KIF21A | SLC2A13 | 12 | 12 | -1 | -1 | 2 | 2 | 2 | 0.14 | 39836729 | 40265763 | tier4 | In-frame | 8975 | NA | 0.348 |
| LUAD | TCGA-93-A4JN-01A | TCGA-93-A4JN | KIF5B|MET | KIF5B | MET | 10 | 7 | -1 | 1 | 31 | 10 | 8 | 0.033 | 32306071 | 116411903 | tier4 | In-frame | 9012 | NA | 0.38068 |
| LUAD | TCGA-MP-A4SV-01A | TCGA-MP-A4SV | KREMEN1|ENTHD1 | KREMEN1 | ENTHD1 | 22 | 22 | 1 | -1 | 5 | 2 | 1 | 0.6 | 29494941 | 40231963 | tier4 | In-frame | 9115 | NA | 0.35221 |
| LUAD | TCGA-78-7155-01A | TCGA-78-7155 | LAMC1|UTRN | LAMC1 | UTRN | 1 | 6 | 1 | 1 | 2 | 15 | 12 | 0.29 | 183114727 | 144665237 | tier3 | NA | 9212 | NA | 0.37494 |
| LUAD | TCGA-55-6972-01A | TCGA-55-6972 | LDLR|C19orf38 | LDLR | C19orf38 | 19 | 19 | 1 | 1 | 2 | 4 | 4 | 0.71 | 11211021 | 10968992 | tier3 | In-frame | 9265 | non-validated | 0 |
| LUAD | TCGA-49-AAR4-01A | TCGA-49-AAR4 | LDLR|SMARCA4 | LDLR | SMARCA4 | 19 | 19 | 1 | 1 | 25 | 7 | 7 | 0.31 | 11234020 | 11172460 | tier1 | Out-of-frame | 9270 | NA | 0.38729 |
| LUAD | TCGA-64-1681-01A | TCGA-64-1681 | LDLRAD3|TM7SF3 | LDLRAD3 | TM7SF3 | 11 | 12 | 1 | -1 | 2 | 4 | 4 | 4.5 | 36120011 | 27156323 | tier2 | In-frame | 9281 | NA | 0.34486 |
| LUAD | TCGA-50-6592-01A | TCGA-50-6592 | LDLRAD3|TRIM44 | LDLRAD3 | TRIM44 | 11 | 11 | 1 | 1 | 5 | 3 | 3 | 0.12 | 36120011 | 35827908 | tier1 | Out-of-frame | 9282 | NA | 0.34425 |
| LUAD | TCGA-97-7937-01A | TCGA-97-7937 | LIN52|SYNE2 | LIN52 | SYNE2 | 14 | 14 | 1 | 1 | 16 | 3 | 3 | 2.2 | 74562688 | 64675476 | tier1 | In-frame | 9356 | NA | 0.36191 |
| LUAD | TCGA-55-8299-01A | TCGA-55-8299 | LMAN2|F12 | LMAN2 | F12 | 5 | 5 | -1 | -1 | 39 | 66 | 61 | 0.45 | 176761285 | 176831091 | tier1 | In-frame | 9377 | non-validated | 0.3664 |
| LUAD | TCGA-55-A493-01A | TCGA-55-A493 | LMBR1L|VDR | LMBR1L | VDR | 12 | 12 | -1 | -1 | 2 | 1 | 1 | 0.11 | 49504267 | 48240591 | tier3 | Out-of-frame | 9392 | NA | 0.37394 |
| LUAD | TCGA-35-5375-01A | TCGA-35-5375 | LRBA|DRD3 | LRBA | DRD3 | 4 | 3 | -1 | -1 | 3 | 2 | 2 | 0.6 | 151749332 | 113847759 | tier1 | Out-of-frame | 9475 | NA | 0.37474 |
| LUAD | TCGA-97-A4M3-01A | TCGA-97-A4M3 | LRP5|CHD6 | LRP5 | CHD6 | 11 | 20 | 1 | -1 | 9 | 2 | 2 | 0.57 | 68131411 | 40086068 | tier1 | Out-of-frame | 9530 | NA | 0.37646 |
| LUAD | TCGA-73-4658-01A | TCGA-73-4658 | LRP5|VPS26B | LRP5 | VPS26B | 11 | 11 | 1 | 1 | 28 | 16 | 15 | 0.056 | 68181480 | 134114832 | tier1 | In-frame | 9537 | NA | 0.3698 |
| LUAD | TCGA-55-6987-01A | TCGA-55-6987 | LRP8|USP24 | LRP8 | USP24 | 1 | 1 | -1 | -1 | 7 | 5 | 5 | 0.012 | 53792545 | 55562845 | tier1 | Out-of-frame | 9553 | NA | 0.37562 |
| LUAD | TCGA-49-4487-01A | TCGA-49-4487 | LRRC16A|SLC17A1 | LRRC16A | SLC17A1 | 6 | 6 | 1 | -1 | 3 | 3 | 3 | 0.36 | 25285137 | 25820143 | tier1 | In-frame | 9566 | NA | 0.34912 |
| LUAD | TCGA-44-6778-01A | TCGA-44-6778 | LRRC45|GNB1 | LRRC45 | GNB1 | 17 | 1 | 1 | -1 | 17 | 11 | 11 | 1 | 79987061 | 1749314 | tier1 | In-frame | 9573 | NA | 0.37415 |
| LUAD | TCGA-86-8673-01A | TCGA-86-8673 | LRRC68|CACNG1 | LRRC68 | CACNG1 | 19 | 17 | 1 | 1 | 23 | 7 | 7 | 0.14 | 45596785 | 65050112 | tier2 | In-frame | 9585 | NA | 0.35178 |
| LUAD | TCGA-38-4630-01A | TCGA-38-4630 | LRRC8E|EVI5L | LRRC8E | EVI5L | 19 | 19 | 1 | 1 | 2 | 1 | 1 | 0.011 | 7960626 | 7911382 | tier3 | CDS-5UTR | 9606 | non-validated | 0.35389 |
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