Transcript Fusion
The transcript fusion data of TCGA were retrieved from the TumorFusions database.
List of the transcript fusions of the GESPs in each cancer type
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| Cancer Type | TCGA_barcode | Patient | Fusion_transcript | Gene_A | Gene_B | Chr_A | Chr_B | Strand_A | Strand_B | #_Discordant_Pairs | #_JSR | #_perfect_JSR | Evalue | Junction_A | Junction_B | Tier | Frame | TN | WGS_validation | Centrality |
| LUAD | TCGA-93-A4JO-01A | TCGA-93-A4JO | IL1R1|IL1R2 | IL1R1 | IL1R2 | 2 | 2 | 1 | 1 | 2 | 18 | 7 | 1 | 102796334 | 102638649 | tier4 | 3UTR-CDS | 8166 | NA | 0.36387 |
| LUAD | TCGA-05-4427-01A | TCGA-05-4427 | IL6ST|ANKRD55 | IL6ST | ANKRD55 | 5 | 5 | -1 | -1 | 24 | 10 | 9 | 0.23 | 55272043 | 55412609 | tier1 | Out-of-frame | 8202 | NA | 0.38335 |
| LUAD | TCGA-44-3396-01A | TCGA-44-3396 | ITGA3|C17orf37 | ITGA3 | C17orf37 | 17 | 17 | 1 | -1 | 119 | 100 | 83 | 0.6 | 48134009 | 37886544 | tier1 | In-frame | 8377 | NA | 0 |
| LUAD | TCGA-MP-A4TK-01A | TCGA-MP-A4TK | ITGA9|SEC13 | ITGA9 | SEC13 | 3 | 3 | 1 | -1 | 197 | 115 | 102 | 0.45 | 37792060 | 10347376 | tier1 | In-frame | 8388 | NA | 0.37195 |
| LUAD | TCGA-44-A4SS-01A | TCGA-44-A4SS | ITGAV|PDE11A | ITGAV | PDE11A | 2 | 2 | 1 | -1 | 13 | 7 | 7 | 0.092 | 187455250 | 178769914 | tier1 | Out-of-frame | 8393 | NA | 0.37275 |
| LUAD | TCGA-97-A4M3-01A | TCGA-97-A4M3 | ITGB4|SAP30BP | ITGB4 | SAP30BP | 17 | 17 | 1 | 1 | 2 | 2 | 2 | 0.53 | 73733725 | 73689520 | tier4 | In-frame | 8402 | NA | 0.38 |
| LUAD | TCGA-55-A4DF-01A | TCGA-55-A4DF | ITGB4|TSPAN10 | ITGB4 | TSPAN10 | 17 | 17 | 1 | 1 | 3 | 4 | 4 | 0.39 | 73747192 | 79612018 | tier1 | Out-of-frame | 8404 | NA | 0.37828 |
| LUAD | TCGA-44-7670-01A | TCGA-44-7670 | ITM2B|ARFGEF2 | ITM2B | ARFGEF2 | 13 | 20 | 1 | 1 | 2 | 4 | 4 | 0.17 | 48835524 | 47615777 | tier3 | 3UTR-CDS | 8419 | NA | 0.36306 |
| LUAD | TCGA-O1-A52J-01A | TCGA-O1-A52J | ITSN1|NEBL | ITSN1 | NEBL | 21 | 10 | 1 | -1 | 33 | 11 | 11 | 0.46 | 35015019 | 21139431 | tier1 | 5UTR-CDS | 8463 | NA | 0.38089 |
| LUAD | TCGA-05-4426-01A | TCGA-05-4426 | KANK1|DOCK8 | KANK1 | DOCK8 | 9 | 9 | 1 | 1 | 13 | 11 | 10 | 1.8 | 504754 | 463517 | tier1 | 5UTR-CDS | 8513 | NA | 0.3629 |
| LUAD | TCGA-91-A4BC-01A | TCGA-91-A4BC | KCNK5|PDE4DIP | KCNK5 | PDE4DIP | 6 | 1 | -1 | -1 | 8 | 7 | 7 | 1.2 | 39196702 | 144994701 | tier1 | In-frame | 8580 | NA | 0.3559 |
| LUAD | TCGA-91-6840-01A | TCGA-91-6840 | KCNMB4|ALDH3B2 | KCNMB4 | ALDH3B2 | 12 | 11 | 1 | -1 | 4 | 1 | 1 | 0.45 | 70760850 | 67435106 | tier2 | CDS-5UTR | 8590 | non-validated | 0.34651 |
| LUAD | TCGA-91-6848-01A | TCGA-91-6848 | KCTD10|TPCN1 | KCTD10 | TPCN1 | 12 | 12 | -1 | 1 | 4 | 3 | 2 | 0.29 | 109907320 | 113716577 | tier1 | Out-of-frame | 8611 | NA | 0.33856 |
| LUAD | TCGA-55-6969-01A | TCGA-55-6969 | KCTD2|TMEM104 | KCTD2 | TMEM104 | 17 | 17 | 1 | 1 | 5 | 1 | 1 | 0.18 | 73045423 | 72835026 | tier4 | In-frame | 8615 | NA | 0.33405 |
| LUAD | TCGA-86-8054-01A | TCGA-86-8054 | KDM2A|DDR2 | KDM2A | DDR2 | 11 | 1 | 1 | 1 | 14 | 21 | 19 | 0.061 | 67007840 | 162749902 | tier1 | In-frame | 8629 | NA | 0.37998 |
| LUAD | TCGA-49-AARO-01A | TCGA-49-AARO | KDM6A|DMD | KDM6A | DMD | X | X | 1 | -1 | 4 | 3 | 3 | 0.85 | 44833960 | 31497220 | tier1 | In-frame | 8706 | NA | 0.368 |
| LUAD | TCGA-55-6978-01A | TCGA-55-6978 | KHDRBS2|LMBRD1 | KHDRBS2 | LMBRD1 | 6 | 6 | -1 | -1 | 7 | 5 | 4 | 0.56 | 62995763 | 70386433 | tier1 | In-frame | 8719 | NA | 0.35499 |
| LUAD | TCGA-05-4427-01A | TCGA-05-4427 | KIAA0182|NOTCH3 | KIAA0182 | NOTCH3 | 16 | 19 | 1 | -1 | 30 | 12 | 12 | 0.051 | 85647004 | 15276902 | tier1 | In-frame | 8746 | NA | 0.37392 |
| LUAD | TCGA-55-A4DF-01A | TCGA-55-A4DF | KIAA0247|TXNDC16 | KIAA0247 | TXNDC16 | 14 | 14 | 1 | -1 | 2 | 1 | 1 | 0.88 | 70078545 | 53011089 | tier3 | 5UTR-5UTR | 8769 | NA | 0.34182 |
| LUAD | TCGA-44-A479-01A | TCGA-44-A479 | KIAA1324L|ABCA13 | KIAA1324L | ABCA13 | 7 | 7 | -1 | 1 | 2 | 3 | 3 | 1.2 | 86547758 | 48308577 | tier3 | Out-of-frame | 8856 | NA | 0.34001 |
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