Transcript Fusion
The transcript fusion data of TCGA were retrieved from the TumorFusions database.
List of the transcript fusions of the GESPs in each cancer type
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| Cancer Type | TCGA_barcode | Patient | Fusion_transcript | Gene_A | Gene_B | Chr_A | Chr_B | Strand_A | Strand_B | #_Discordant_Pairs | #_JSR | #_perfect_JSR | Evalue | Junction_A | Junction_B | Tier | Frame | TN | WGS_validation | Centrality |
| LUAD | TCGA-91-6840-01A | TCGA-91-6840 | GPR116|MEP1A | GPR116 | MEP1A | 6 | 6 | -1 | 1 | 85 | 97 | 93 | 0.17 | 46832779 | 46802315 | tier1 | In-frame | 7357 | non-validated | 0.367 |
| LUAD | TCGA-44-4112-01A | TCGA-44-4112 | GPR160|SEC62 | GPR160 | SEC62 | 3 | 3 | 1 | 1 | 11 | 5 | 1 | 0.14 | 169797685 | 169693396 | tier4 | 5UTR-CDS | 7370 | non-validated | 0.34769 |
| LUAD | TCGA-55-8205-01A | TCGA-55-8205 | GPR39|ZNF285 | GPR39 | ZNF285 | 2 | 19 | 1 | -1 | 3 | 3 | 3 | 2.1 | 133175471 | 44901421 | tier1 | CDS-5UTR | 7378 | NA | 0.33691 |
| LUAD | TCGA-MP-A4TF-01A | TCGA-MP-A4TF | GPT2|HSD17B2 | GPT2 | HSD17B2 | 16 | 16 | 1 | 1 | 6 | 3 | 3 | 2.4 | 46956328 | 82104547 | tier1 | Out-of-frame | 7389 | NA | 0.34325 |
| LUAD | TCGA-L9-A8F4-01A | TCGA-L9-A8F4 | GRAMD1A|KRTDAP | GRAMD1A | KRTDAP | 19 | 19 | 1 | -1 | 6 | 8 | 8 | 100 | 35500233 | 35978661 | tier1 | In-frame | 7398 | NA | 0.33538 |
| LUAD | TCGA-78-7542-01A | TCGA-78-7542 | GSN|HLA-F | GSN | HLA-F | 9 | 6 | 1 | 1 | 2 | 2 | 1 | 0.25 | 124095016 | 29691219 | tier3 | 3UTR-5UTR | 7498 | NA | 0.3756 |
| LUAD | TCGA-95-7948-01A | TCGA-95-7948 | GTF2E2|ACE | GTF2E2 | ACE | 8 | 17 | -1 | 1 | 6 | 7 | 5 | 0.25 | 30510950 | 61561691 | tier2 | Out-of-frame | 7516 | NA | 0.36608 |
| LUAD | TCGA-49-AAR0-01A | TCGA-49-AAR0 | GTF2IRD1|ZAN | GTF2IRD1 | ZAN | 7 | 7 | 1 | 1 | 3 | 9 | 7 | 0.15 | 73953090 | 100389588 | tier1 | Out-of-frame | 7543 | NA | 0.36354 |
| LUAD | TCGA-55-8089-01A | TCGA-55-8089 | HAS2|HHLA1 | HAS2 | HHLA1 | 8 | 8 | -1 | -1 | 51 | 40 | 31 | 0.61 | 122653093 | 133112381 | tier1 | 5UTR-CDS | 7591 | NA | 0.344 |
| LUAD | TCGA-50-5933-01A | TCGA-50-5933 | HDLBP|CADM2 | HDLBP | CADM2 | 2 | 3 | -1 | 1 | 5 | 1 | 1 | 0.021 | 242254985 | 85851197 | tier3 | 5UTR-CDS | 7646 | NA | 0.35872 |
| LUAD | TCGA-78-7146-01A | TCGA-78-7146 | HELZ|CACNG4 | HELZ | CACNG4 | 17 | 17 | -1 | 1 | 50 | 28 | 24 | 0.011 | 65116521 | 65026582 | tier1 | In-frame | 7693 | validated | 0.35632 |
| LUAD | TCGA-44-2668-01A | TCGA-44-2668 | HIF1A|PRKCH | HIF1A | PRKCH | 14 | 14 | 1 | 1 | 56 | 37 | 33 | 0.5 | 62207906 | 61995793 | tier1 | In-frame | 7757 | non-validated | 0.39003 |
| LUAD | TCGA-44-8117-01A | TCGA-44-8117 | HIRA|ADAM2 | HIRA | ADAM2 | 22 | 8 | -1 | -1 | 11 | 7 | 4 | 1.3 | 19393309 | 39627094 | tier1 | Out-of-frame | 7782 | NA | 0.37262 |
| LUAD | TCGA-78-7149-01A | TCGA-78-7149 | HLA-C|FOXP1 | HLA-C | FOXP1 | 6 | 3 | -1 | -1 | 2 | 77 | 56 | 0.003 | 31236528 | 71007472 | tier3 | NA | 7831 | NA | 0.36997 |
| LUAD | TCGA-50-5944-01A | TCGA-50-5944 | HLCS|GRIK1 | HLCS | GRIK1 | 21 | 21 | -1 | -1 | 2 | 5 | 2 | 0.84 | 38269160 | 30971257 | tier2 | Out-of-frame | 7839 | NA | 0.36226 |
| LUAD | TCGA-69-8254-01A | TCGA-69-8254 | HSPG2|KIAA0247 | HSPG2 | KIAA0247 | 1 | 14 | -1 | 1 | 2 | 4 | 2 | 0.019 | 22157475 | 70125230 | tier4 | CDS-5UTR | 8012 | NA | 0.36665 |
| LUAD | TCGA-05-4430-01A | TCGA-05-4430 | HSPG2|NTNG1 | HSPG2 | NTNG1 | 1 | 1 | -1 | 1 | 4 | 3 | 2 | 2.4 | 22222415 | 107866904 | tier1 | Out-of-frame | 8015 | NA | 0.36869 |
| LUAD | TCGA-L9-A443-01A | TCGA-L9-A443 | HTATSF1|BRS3 | HTATSF1 | BRS3 | X | X | 1 | 1 | 18 | 4 | 3 | 0.3 | 135586622 | 135572292 | tier1 | Out-of-frame | 8025 | NA | 0.3803 |
| LUAD | TCGA-NJ-A4YF-01A | TCGA-NJ-A4YF | IGF2R|WTAP | IGF2R | WTAP | 6 | 6 | 1 | 1 | 8 | 2 | 2 | 0.34 | 160495007 | 160163120 | tier1 | Out-of-frame | 8115 | NA | 0.3664 |
| LUAD | TCGA-91-8499-01A | TCGA-91-8499 | IL13RA1|WDR44 | IL13RA1 | WDR44 | X | X | 1 | 1 | 160 | 102 | 96 | 0.59 | 117875119 | 117521303 | tier2 | In-frame | 8161 | NA | 0.37503 |
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