Transcript Fusion
The transcript fusion data of TCGA were retrieved from the TumorFusions database.
List of the transcript fusions of the GESPs in each cancer type
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| Cancer Type | TCGA_barcode | Patient | Fusion_transcript | Gene_A | Gene_B | Chr_A | Chr_B | Strand_A | Strand_B | #_Discordant_Pairs | #_JSR | #_perfect_JSR | Evalue | Junction_A | Junction_B | Tier | Frame | TN | WGS_validation | Centrality |
| LUAD | TCGA-44-4112-01A | TCGA-44-4112 | FBXO34|LGALS3 | FBXO34 | LGALS3 | 14 | 14 | 1 | 1 | 49 | 46 | 42 | 0.49 | 55738255 | 55606993 | tier1 | 5UTR-CDS | 6350 | non-validated | 0.37149 |
| LUAD | TCGA-69-8255-01A | TCGA-69-8255 | FGFR1|SLC20A2 | FGFR1 | SLC20A2 | 8 | 8 | -1 | -1 | 3 | 1 | 1 | 0.22 | 38277057 | 42330172 | tier2 | CDS-5UTR | 6455 | NA | 0.3837 |
| LUAD | TCGA-38-4630-01A | TCGA-38-4630 | FGFR3|TACC3 | FGFR3 | TACC3 | 4 | 4 | 1 | 1 | 8 | 8 | 7 | 0.12 | 1803470 | 1746245 | tier1 | Out-of-frame | 6483 | non-validated | 0.38077 |
| LUAD | TCGA-55-8615-01A | TCGA-55-8615 | FIP1L1|SORCS1 | FIP1L1 | SORCS1 | 4 | 10 | 1 | -1 | 2 | 3 | 3 | 0.008 | 54266006 | 108489872 | tier2 | In-frame | 6545 | NA | 0.34574 |
| LUAD | TCGA-78-7161-01A | TCGA-78-7161 | FNIP1|SUSD4 | FNIP1 | SUSD4 | 5 | 1 | -1 | -1 | 19 | 7 | 7 | 0.23 | 130928076 | 223408442 | tier1 | Out-of-frame | 6624 | NA | 0.33131 |
| LUAD | TCGA-50-6592-01A | TCGA-50-6592 | FRAS1|SHROOM3 | FRAS1 | SHROOM3 | 4 | 4 | 1 | 1 | 16 | 4 | 2 | 1.4 | 78987170 | 77476762 | tier1 | In-frame | 6711 | NA | 0.35742 |
| LUAD | TCGA-78-7143-01A | TCGA-78-7143 | FRS2|ACSS2 | FRS2 | ACSS2 | 12 | 20 | 1 | 1 | 5 | 3 | 2 | 0.21 | 69864310 | 33511126 | tier1 | 5UTR-CDS | 6737 | non-validated | 0.37786 |
| LUAD | TCGA-69-7760-01A | TCGA-69-7760 | FRS2|LYZ | FRS2 | LYZ | 12 | 12 | 1 | 1 | 6 | 3 | 3 | 1.3 | 69864310 | 69743888 | tier1 | 5UTR-CDS | 6761 | NA | 0.3788 |
| LUAD | TCGA-49-4501-01A | TCGA-49-4501 | FRS2|MDM2 | FRS2 | MDM2 | 12 | 12 | 1 | 1 | 10 | 6 | 5 | 0.15 | 69925836 | 69202988 | tier1 | 5UTR-CDS | 6764 | NA | 0.38856 |
| LUAD | TCGA-86-8585-01A | TCGA-86-8585 | FRS2|OS9 | FRS2 | OS9 | 12 | 12 | 1 | 1 | 16 | 7 | 7 | 2.3 | 69864310 | 58088533 | tier4 | 5UTR-CDS | 6771 | NA | 0.37553 |
| LUAD | TCGA-55-7907-01A | TCGA-55-7907 | FRS2|PIP4K2C | FRS2 | PIP4K2C | 12 | 12 | 1 | 1 | 20 | 24 | 14 | 2.5 | 69962876 | 57994107 | tier1 | In-frame | 6774 | NA | 0.37598 |
| LUAD | TCGA-44-7667-01A | TCGA-44-7667 | FXYD6|CD3G | FXYD6 | CD3G | 11 | 11 | -1 | 1 | 3 | 1 | 1 | 0.21 | 117747307 | 118219742 | tier3 | 5UTR-CDS | 6848 | NA | 0.36165 |
| LUAD | TCGA-MP-A4SY-01A | TCGA-MP-A4SY | FYN|LAMA4 | FYN | LAMA4 | 6 | 6 | -1 | -1 | 2 | 4 | 4 | 0.07 | 112015578 | 112575493 | tier3 | CDS-5UTR | 6854 | NA | 0.3906 |
| LUAD | TCGA-78-7143-01A | TCGA-78-7143 | GALNT11|DPP6 | GALNT11 | DPP6 | 7 | 7 | 1 | 1 | 2 | 1 | 1 | 0.13 | 151722969 | 154143299 | tier3 | 5UTR-CDS | 6915 | non-validated | 0.34915 |
| LUAD | TCGA-O1-A52J-01A | TCGA-O1-A52J | GAS6|GPC5 | GAS6 | GPC5 | 13 | 13 | -1 | 1 | 5 | 2 | 2 | 0.94 | 114566548 | 93518535 | tier1 | Out-of-frame | 6962 | NA | 0.37609 |
| LUAD | TCGA-67-4679-01B | TCGA-67-4679 | GIPR|PRR12 | GIPR | PRR12 | 19 | 19 | 1 | 1 | 5 | 3 | 2 | 0.14 | 46181484 | 50117790 | tier1 | In-frame | 7073 | NA | 0.34623 |
| LUAD | TCGA-91-8499-01A | TCGA-91-8499 | GK5|PAQR9 | GK5 | PAQR9 | 3 | 3 | -1 | -1 | 5 | 5 | 5 | 0.89 | 141917644 | 142671692 | tier1 | NA | 7081 | NA | 0.34071 |
| LUAD | TCGA-67-3771-01A | TCGA-67-3771 | GML|C8orf47 | GML | C8orf47 | 8 | 8 | 1 | 1 | 3 | 1 | 1 | 0.54 | 143922641 | 99101304 | tier3 | In-frame | 7154 | non-validated | 0 |
| LUAD | TCGA-49-AARE-01A | TCGA-49-AARE | GNB1|C1orf222 | GNB1 | C1orf222 | 1 | 1 | -1 | -1 | 3 | 12 | 10 | 0.53 | 1822259 | 1891469 | tier1 | 5UTR-CDS | 7211 | NA | 0 |
| LUAD | TCGA-38-4630-01A | TCGA-38-4630 | GOLIM4|NCEH1 | GOLIM4 | NCEH1 | 3 | 3 | -1 | -1 | 2 | 3 | 3 | 0.017 | 167812887 | 172365904 | tier2 | Out-of-frame | 7276 | non-validated | 0.32787 |
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