Transcript Fusion
The transcript fusion data of TCGA were retrieved from the TumorFusions database.
List of the transcript fusions of the GESPs in each cancer type
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| Cancer Type | TCGA_barcode | Patient | Fusion_transcript | Gene_A | Gene_B | Chr_A | Chr_B | Strand_A | Strand_B | #_Discordant_Pairs | #_JSR | #_perfect_JSR | Evalue | Junction_A | Junction_B | Tier | Frame | TN | WGS_validation | Centrality |
| LUAD | TCGA-91-6848-01A | TCGA-91-6848 | EPHA5|RUFY3 | EPHA5 | RUFY3 | 4 | 4 | -1 | 1 | 4 | 4 | 4 | 0.1 | 66356095 | 71628236 | tier1 | In-frame | 5671 | NA | 0.37276 |
| LUAD | TCGA-91-8499-01A | TCGA-91-8499 | EPS15|INADL | EPS15 | INADL | 1 | 1 | -1 | 1 | 17 | 7 | 7 | 0.46 | 51984871 | 62503649 | tier1 | Out-of-frame | 5698 | NA | 0.37674 |
| LUAD | TCGA-69-7761-01A | TCGA-69-7761 | ERBB2|SUPT16H | ERBB2 | SUPT16H | 17 | 14 | 1 | -1 | 2 | 2 | 1 | 0.23 | 37884915 | 21829491 | tier2 | 3UTR-CDS | 5730 | NA | 0.39124 |
| LUAD | TCGA-50-5944-01A | TCGA-50-5944 | ERBB2IP|ASXL1 | ERBB2IP | ASXL1 | 5 | 20 | 1 | 1 | 18 | 5 | 4 | 0.62 | 65350779 | 31015931 | tier1 | In-frame | 5733 | NA | 0.37903 |
| LUAD | TCGA-05-4415-01A | TCGA-05-4415 | ERC1|VWF | ERC1 | VWF | 12 | 12 | 1 | -1 | 10 | 11 | 11 | 0.25 | 1372331 | 6085426 | tier1 | In-frame | 5756 | NA | 0.37266 |
| LUAD | TCGA-78-8660-01A | TCGA-78-8660 | ERC1|WNK1 | ERC1 | WNK1 | 12 | 12 | 1 | 1 | 6 | 4 | 2 | 0.089 | 1137738 | 987378 | tier1 | In-frame | 5757 | NA | 0.37749 |
| LUAD | TCGA-86-7954-01A | TCGA-86-7954 | ESYT1|MED14 | ESYT1 | MED14 | 12 | X | 1 | -1 | 23 | 13 | 13 | 1.3 | 56532797 | 40514312 | tier1 | In-frame | 5839 | NA | 0.35652 |
| LUAD | TCGA-05-4434-01A | TCGA-05-4434 | ETNK1|GLT1D1 | ETNK1 | GLT1D1 | 12 | 12 | 1 | 1 | 21 | 8 | 6 | 0.84 | 22778520 | 129429871 | tier1 | In-frame | 5851 | NA | 0.33588 |
| LUAD | TCGA-97-8179-01A | TCGA-97-8179 | EXOC1|IDO1 | EXOC1 | IDO1 | 4 | 8 | 1 | 1 | 5 | 5 | 4 | 0.076 | 56768704 | 39780071 | tier1 | Out-of-frame | 5893 | NA | 0.34002 |
| LUAD | TCGA-05-4398-01A | TCGA-05-4398 | EXOC4|PTAFR | EXOC4 | PTAFR | 7 | 1 | 1 | -1 | 9 | 16 | 15 | 0.055 | 133314894 | 28477570 | tier1 | CDS-5UTR | 5902 | non-validated | 0.37327 |
| LUAD | TCGA-86-8673-01A | TCGA-86-8673 | EXOC7|FOXJ1 | EXOC7 | FOXJ1 | 17 | 17 | -1 | -1 | 44 | 38 | 37 | 0.13 | 74093877 | 74134201 | tier4 | Out-of-frame | 5917 | NA | 0.36531 |
| LUAD | TCGA-55-6986-01A | TCGA-55-6986 | EZR|ROS1 | EZR | ROS1 | 6 | 6 | -1 | -1 | 172 | 185 | 154 | 0.82 | 159191796 | 117645578 | tier1 | In-frame | 5966 | non-validated | 0.38331 |
| LUAD | TCGA-NJ-A7XG-01A | TCGA-NJ-A7XG | EZR|ROS1 | EZR | ROS1 | 6 | 6 | -1 | -1 | 170 | 175 | 169 | 0.82 | 159191796 | 117645578 | tier1 | In-frame | 5967 | NA | 0.38331 |
| LUAD | TCGA-78-7146-01A | TCGA-78-7146 | F11R|NOS1AP | F11R | NOS1AP | 1 | 1 | -1 | 1 | 69 | 55 | 48 | 0.27 | 160990800 | 162324977 | tier1 | In-frame | 5968 | non-validated | 0.37841 |
| LUAD | TCGA-55-8302-01A | TCGA-55-8302 | FAM126B|ALS2CR12 | FAM126B | ALS2CR12 | 2 | 2 | -1 | -1 | 2 | 1 | 1 | 3.5 | 201936333 | 202154508 | tier4 | 5UTR-CDS | 6031 | NA | 0.34129 |
| LUAD | TCGA-91-8499-01A | TCGA-91-8499 | FAM162A|CASR | FAM162A | CASR | 3 | 3 | 1 | 1 | 12 | 12 | 12 | 0.54 | 122103146 | 121980375 | tier1 | Out-of-frame | 6074 | NA | 0.3748 |
| LUAD | TCGA-64-5779-01A | TCGA-64-5779 | FAM60A|CD27 | FAM60A | CD27 | 12 | 12 | -1 | 1 | 41 | 10 | 6 | 0.012 | 31478958 | 6554590 | tier1 | 5UTR-CDS | 6196 | NA | 0.35785 |
| LUAD | TCGA-97-A4M3-01A | TCGA-97-A4M3 | FAT3|CDH26 | FAT3 | CDH26 | 11 | 20 | 1 | 1 | 21 | 11 | 11 | 0.051 | 92620279 | 58577868 | tier1 | Out-of-frame | 6274 | NA | 0.34568 |
| LUAD | TCGA-97-A4M3-01A | TCGA-97-A4M3 | FAT3|DPP3 | FAT3 | DPP3 | 11 | 11 | 1 | 1 | 37 | 14 | 12 | 0.17 | 92088570 | 66276550 | tier1 | In-frame | 6275 | NA | 0.35464 |
| LUAD | TCGA-86-A4P7-01A | TCGA-86-A4P7 | FBXL20|TTC17 | FBXL20 | TTC17 | 17 | 11 | -1 | 1 | 15 | 11 | 11 | 0.039 | 37499433 | 43511789 | tier1 | Out-of-frame | 6323 | NA | 0.35548 |
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