Transcript Fusion
The transcript fusion data of TCGA were retrieved from the TumorFusions database.
List of the transcript fusions of the GESPs in each cancer type
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| Cancer Type | TCGA_barcode | Patient | Fusion_transcript | Gene_A | Gene_B | Chr_A | Chr_B | Strand_A | Strand_B | #_Discordant_Pairs | #_JSR | #_perfect_JSR | Evalue | Junction_A | Junction_B | Tier | Frame | TN | WGS_validation | Centrality |
| LUAD | TCGA-49-6743-01A | TCGA-49-6743 | DCHS2|FGG | DCHS2 | FGG | 4 | 4 | -1 | -1 | 217 | 151 | 133 | 0.013 | 155410456 | 155533353 | tier1 | In-frame | 4599 | NA | 0.36468 |
| LUAD | TCGA-MP-A4TE-01A | TCGA-MP-A4TE | DCLRE1B|DNAJB4 | DCLRE1B | DNAJB4 | 1 | 1 | 1 | 1 | 11 | 13 | 13 | 5.1 | 114448397 | 78481698 | tier1 | In-frame | 4606 | NA | 0.36283 |
| LUAD | TCGA-91-6847-01A | TCGA-91-6847 | DDX19A|ABCC11 | DDX19A | ABCC11 | 16 | 16 | 1 | -1 | 2 | 8 | 6 | 1.8 | 70384508 | 48269088 | tier3 | CDS-5UTR | 4650 | non-validated | 0.35716 |
| LUAD | TCGA-78-7147-01A | TCGA-78-7147 | DHX40|UNC5D | DHX40 | UNC5D | 17 | 8 | 1 | 1 | 2 | 3 | 2 | 0.33 | 57685712 | 35563447 | tier4 | 3UTR-CDS | 4803 | NA | 0.36162 |
| LUAD | TCGA-44-4112-01A | TCGA-44-4112 | DNAJC3|CLDN10 | DNAJC3 | CLDN10 | 13 | 13 | 1 | 1 | 9 | 8 | 8 | 0.15 | 96329591 | 96212386 | tier1 | In-frame | 4946 | non-validated | 0.36974 |
| LUAD | TCGA-78-7155-01A | TCGA-78-7155 | DSP|UTRN | DSP | UTRN | 6 | 6 | 1 | 1 | 2 | 31 | 21 | 0.1 | 7586805 | 144665237 | tier3 | NA | 5129 | NA | 0.37417 |
| LUAD | TCGA-97-8174-01A | TCGA-97-8174 | ECHDC1|FYN | ECHDC1 | FYN | 6 | 6 | -1 | -1 | 31 | 7 | 6 | 0.095 | 127635961 | 112029223 | tier1 | In-frame | 5262 | NA | 0.38866 |
| LUAD | TCGA-78-7539-01A | TCGA-78-7539 | EFNA3|HFE2 | EFNA3 | HFE2 | 1 | 1 | 1 | 1 | 3 | 1 | 1 | 0.47 | 155051545 | 145415279 | tier4 | Out-of-frame | 5353 | NA | 0.36117 |
| LUAD | TCGA-78-8640-01A | TCGA-78-8640 | EFR3A|ZFAT | EFR3A | ZFAT | 8 | 8 | 1 | -1 | 57 | 25 | 22 | 0.075 | 132999949 | 135577664 | tier1 | In-frame | 5361 | NA | 0.34514 |
| LUAD | TCGA-44-6778-01A | TCGA-44-6778 | EHD1|BATF2 | EHD1 | BATF2 | 11 | 11 | -1 | -1 | 19 | 11 | 10 | 1.2 | 64641893 | 64757284 | tier1 | Out-of-frame | 5402 | NA | 0.37255 |
| LUAD | TCGA-91-8499-01A | TCGA-91-8499 | EIF4G3|ECE1 | EIF4G3 | ECE1 | 1 | 1 | -1 | -1 | 32 | 23 | 20 | 0.093 | 21415631 | 21573856 | tier1 | In-frame | 5474 | NA | 0.36349 |
| LUAD | TCGA-69-8255-01A | TCGA-69-8255 | EMID2|BET1 | EMID2 | BET1 | 7 | 7 | 1 | -1 | 4 | 6 | 6 | 1.9 | 101006471 | 93623697 | tier1 | Out-of-frame | 5545 | NA | 0.36496 |
| LUAD | TCGA-50-8460-01A | TCGA-50-8460 | EML4|ALK | EML4 | ALK | 2 | 2 | 1 | -1 | 13 | 13 | 11 | 0.35 | 42492091 | 29446394 | tier1 | In-frame | 5559 | NA | 0.38609 |
| LUAD | TCGA-67-6215-01A | TCGA-67-6215 | EML4|ALK | EML4 | ALK | 2 | 2 | 1 | -1 | 31 | 40 | 37 | 0.35 | 42491871 | 29446394 | tier1 | In-frame | 5560 | validated | 0.38609 |
| LUAD | TCGA-67-6216-01A | TCGA-67-6216 | EML4|ALK | EML4 | ALK | 2 | 2 | 1 | -1 | 10 | 10 | 9 | 0.35 | 42492091 | 29446394 | tier1 | In-frame | 5561 | NA | 0.38609 |
| LUAD | TCGA-78-7163-01A | TCGA-78-7163 | EML4|ALK | EML4 | ALK | 2 | 2 | 1 | -1 | 51 | 61 | 51 | 0.35 | 42522656 | 29446394 | tier2 | In-frame | 5562 | NA | 0.38609 |
| LUAD | TCGA-86-A4P8-01A | TCGA-86-A4P8 | EML4|ALK | EML4 | ALK | 2 | 2 | 1 | -1 | 2 | 3 | 3 | 0.35 | 42552694 | 29446394 | tier3 | In-frame | 5563 | NA | 0.38609 |
| LUAD | TCGA-78-7149-01A | TCGA-78-7149 | ENO1|SNW1 | ENO1 | SNW1 | 1 | 14 | -1 | -1 | 2 | 74 | 13 | 1.7 | 8921061 | 78189203 | tier3 | 3UTR-CDS | 5589 | NA | 0.37197 |
| LUAD | TCGA-50-6673-01A | TCGA-50-6673 | ENO1|UTRN | ENO1 | UTRN | 1 | 6 | -1 | 1 | 2 | 13 | 2 | 0.78 | 8921061 | 144665237 | tier3 | NA | 5591 | NA | 0.37755 |
| LUAD | TCGA-J2-A4AD-01A | TCGA-J2-A4AD | EPHA10|COL8A2 | EPHA10 | COL8A2 | 1 | 1 | -1 | -1 | 5 | 3 | 2 | 0.074 | 38192774 | 36581353 | tier1 | CDS-5UTR | 5666 | NA | 0.35869 |
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