Transcript Fusion
The transcript fusion data of TCGA were retrieved from the TumorFusions database.
List of the transcript fusions of the GESPs in each cancer type
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| Cancer Type | TCGA_barcode | Patient | Fusion_transcript | Gene_A | Gene_B | Chr_A | Chr_B | Strand_A | Strand_B | #_Discordant_Pairs | #_JSR | #_perfect_JSR | Evalue | Junction_A | Junction_B | Tier | Frame | TN | WGS_validation | Centrality |
| LUAD | TCGA-55-6972-01A | TCGA-55-6972 | CLPTM1|AP1M1 | CLPTM1 | AP1M1 | 19 | 19 | 1 | 1 | 5 | 8 | 7 | 0.73 | 45458724 | 16337232 | tier1 | In-frame | 3838 | validated | 0.36897 |
| LUAD | TCGA-38-4632-01A | TCGA-38-4632 | CLPTM1|IGSF23 | CLPTM1 | IGSF23 | 19 | 19 | 1 | 1 | 9 | 11 | 10 | 0.086 | 45458724 | 45127000 | tier1 | NA | 3842 | NA | 0.34054 |
| LUAD | TCGA-55-8616-01A | TCGA-55-8616 | CLSTN1|CTNNBIP1 | CLSTN1 | CTNNBIP1 | 1 | 1 | -1 | -1 | 62 | 27 | 23 | 0.16 | 9809519 | 9910834 | tier1 | In-frame | 3851 | NA | 0.36254 |
| LUAD | TCGA-MP-A4SW-01A | TCGA-MP-A4SW | CLSTN1|PLEKHG5 | CLSTN1 | PLEKHG5 | 1 | 1 | -1 | -1 | 4 | 3 | 3 | 0.97 | 9833330 | 6537718 | tier1 | Out-of-frame | 3854 | NA | 0.36042 |
| LUAD | TCGA-69-7765-01A | TCGA-69-7765 | CLTC|PTRH2 | CLTC | PTRH2 | 17 | 17 | 1 | -1 | 14 | 6 | 6 | 0.57 | 57697534 | 57775339 | tier1 | In-frame | 3865 | NA | 0.37228 |
| LUAD | TCGA-44-2665-01A | TCGA-44-2665 | CLTC|ROS1 | CLTC | ROS1 | 17 | 6 | 1 | -1 | 53 | 16 | 15 | 0.17 | 57768072 | 117642557 | tier4 | In-frame | 3866 | non-validated | 0.38495 |
| LUAD | TCGA-78-7539-01A | TCGA-78-7539 | CNPY3|CXCR5 | CNPY3 | CXCR5 | 6 | 11 | 1 | 1 | 2 | 1 | 1 | 0.27 | 42907007 | 118754475 | tier4 | 3UTR-5UTR | 3941 | NA | 0.3489 |
| LUAD | TCGA-49-4501-01A | TCGA-49-4501 | CNTN1|TSPAN8 | CNTN1 | TSPAN8 | 12 | 12 | 1 | -1 | 159 | 98 | 2 | 0.27 | 41086394 | 71676599 | tier1 | 5UTR-5UTR | 3951 | NA | 0.37099 |
| LUAD | TCGA-69-7761-01A | TCGA-69-7761 | CPD|ORMDL3 | CPD | ORMDL3 | 17 | 17 | 1 | -1 | 30 | 14 | 11 | 0.72 | 28712254 | 38080478 | tier1 | CDS-5UTR | 4109 | NA | 0.35438 |
| LUAD | TCGA-75-5146-01A | TCGA-75-5146 | CPNE1|DMD | CPNE1 | DMD | 20 | X | -1 | -1 | 50 | 4 | 3 | 1.1 | 34246852 | 32408298 | tier1 | 5UTR-CDS | 4132 | NA | 0.37925 |
| LUAD | TCGA-44-7670-01A | TCGA-44-7670 | CPNE8|CADM2 | CPNE8 | CADM2 | 12 | 3 | -1 | 1 | 49 | 34 | 29 | 0.14 | 39299239 | 85851197 | tier1 | Out-of-frame | 4135 | NA | 0.35052 |
| LUAD | TCGA-80-5611-01A | TCGA-80-5611 | CPNE8|CNTN1 | CPNE8 | CNTN1 | 12 | 12 | -1 | 1 | 3 | 4 | 4 | 0.18 | 39266806 | 41408030 | tier1 | Out-of-frame | 4137 | NA | 0.37534 |
| LUAD | TCGA-L9-A743-01A | TCGA-L9-A743 | CRIM1|TBC1D25 | CRIM1 | TBC1D25 | 2 | X | 1 | 1 | 5 | 2 | 1 | 0.24 | 36583766 | 48417285 | tier3 | In-frame | 4223 | NA | 0.34995 |
| LUAD | TCGA-55-6975-01A | TCGA-55-6975 | CTNNA1|SLC38A9 | CTNNA1 | SLC38A9 | 5 | 5 | 1 | -1 | 9 | 7 | 6 | 0.55 | 138089199 | 55000262 | tier1 | NA | 4351 | NA | 0.36543 |
| LUAD | TCGA-83-5908-01A | TCGA-83-5908 | CTNND1|DOCK8 | CTNND1 | DOCK8 | 11 | 9 | 1 | 1 | 15 | 14 | 12 | 0.14 | 57574455 | 304581 | tier1 | Out-of-frame | 4370 | NA | 0.38192 |
| LUAD | TCGA-55-8506-01A | TCGA-55-8506 | CTNND1|ZDHHC5 | CTNND1 | ZDHHC5 | 11 | 11 | 1 | 1 | 7 | 3 | 3 | 1.1 | 57576938 | 57463392 | tier1 | Out-of-frame | 4377 | NA | 0.38113 |
| LUAD | TCGA-78-8640-01A | TCGA-78-8640 | CTNND1|ZDHHC5 | CTNND1 | ZDHHC5 | 11 | 11 | 1 | 1 | 39 | 17 | 14 | 1.1 | 57529518 | 57466031 | tier4 | 5UTR-CDS | 4378 | NA | 0.38113 |
| LUAD | TCGA-44-A47B-01A | TCGA-44-A47B | CYTH1|KSR1 | CYTH1 | KSR1 | 17 | 17 | -1 | 1 | 5 | 1 | 1 | 0.061 | 76732774 | 25877594 | tier3 | NA | 4511 | NA | 0.3733 |
| LUAD | TCGA-38-4630-01A | TCGA-38-4630 | CYTH1|USP36 | CYTH1 | USP36 | 17 | 17 | -1 | -1 | 8 | 8 | 8 | 0.62 | 76778284 | 76834832 | tier1 | CDS-5UTR | 4514 | non-validated | 0.37188 |
| LUAD | TCGA-05-4427-01A | TCGA-05-4427 | DCBLD2|ST3GAL6 | DCBLD2 | ST3GAL6 | 3 | 3 | -1 | 1 | 13 | 7 | 5 | 0.2 | 98600384 | 98487274 | tier1 | CDS-5UTR | 4596 | NA | 0.33963 |
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