Transcript Fusion
The transcript fusion data of TCGA were retrieved from the TumorFusions database.
List of the transcript fusions of the GESPs in each cancer type
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| Cancer Type | TCGA_barcode | Patient | Fusion_transcript | Gene_A | Gene_B | Chr_A | Chr_B | Strand_A | Strand_B | #_Discordant_Pairs | #_JSR | #_perfect_JSR | Evalue | Junction_A | Junction_B | Tier | Frame | TN | WGS_validation | Centrality |
| LUAD | TCGA-86-7953-01A | TCGA-86-7953 | CD55|C4BPA | CD55 | C4BPA | 1 | 1 | 1 | 1 | 20 | 45 | 41 | 0.063 | 207500182 | 207300058 | tier1 | In-frame | 3276 | NA | 0.36914 |
| LUAD | TCGA-86-7954-01A | TCGA-86-7954 | CD63|EIF2AK2 | CD63 | EIF2AK2 | 12 | 2 | -1 | -1 | 2 | 6 | 3 | 1.5 | 56119232 | 37342384 | tier2 | NA | 3285 | NA | 0.38528 |
| LUAD | TCGA-64-1680-01A | TCGA-64-1680 | CD74|ROS1 | CD74 | ROS1 | 5 | 6 | -1 | -1 | 175 | 173 | 161 | 1.6 | 149784243 | 117645578 | tier1 | In-frame | 3294 | validated | 0.38396 |
| LUAD | TCGA-86-8278-01A | TCGA-86-8278 | CD74|ROS1 | CD74 | ROS1 | 5 | 6 | -1 | -1 | 203 | 260 | 245 | 1.6 | 149784243 | 117645578 | tier1 | In-frame | 3295 | NA | 0.38396 |
| LUAD | TCGA-05-4427-01A | TCGA-05-4427 | CDH1|CDKL3 | CDH1 | CDKL3 | 16 | 5 | 1 | -1 | 42 | 22 | 21 | 0.37 | 68856128 | 133644157 | tier1 | Out-of-frame | 3374 | NA | 0.37752 |
| LUAD | TCGA-44-7669-01A | TCGA-44-7669 | CDH2|LAMA3 | CDH2 | LAMA3 | 18 | 18 | -1 | 1 | 38 | 17 | 14 | 0.47 | 25727637 | 21394367 | tier1 | Out-of-frame | 3388 | NA | 0.37435 |
| LUAD | TCGA-91-6847-01A | TCGA-91-6847 | CDKAL1|C6orf89 | CDKAL1 | C6orf89 | 6 | 6 | 1 | 1 | 8 | 5 | 5 | 0.3 | 20548936 | 36862280 | tier1 | NA | 3446 | non-validated | 0 |
| LUAD | TCGA-71-6725-01A | TCGA-71-6725 | CEACAM6|DDX27 | CEACAM6 | DDX27 | 19 | 20 | 1 | 1 | 2 | 247 | 189 | 0.88 | 42276113 | 47849303 | tier3 | NA | 3487 | NA | 0.36962 |
| LUAD | TCGA-55-6984-01A | TCGA-55-6984 | CEACAM6|SIAE | CEACAM6 | SIAE | 19 | 11 | 1 | -1 | 2 | 74 | 61 | 0.54 | 42276113 | 124543777 | tier3 | 3UTR-5UTR | 3488 | non-validated | 0.35949 |
| LUAD | TCGA-49-4501-01A | TCGA-49-4501 | CEACAM6|ZNFX1 | CEACAM6 | ZNFX1 | 19 | 20 | 1 | -1 | 2 | 58 | 54 | 0.71 | 42276113 | 47863418 | tier4 | 3UTR-CDS | 3489 | NA | 0.36304 |
| LUAD | TCGA-62-8394-01A | TCGA-62-8394 | CELSR1|CD52 | CELSR1 | CD52 | 22 | 1 | -1 | 1 | 139 | 145 | 138 | 0.18 | 46859604 | 26646662 | tier1 | Out-of-frame | 3507 | NA | 0.36406 |
| LUAD | TCGA-97-A4M3-01A | TCGA-97-A4M3 | CHD6|FAT3 | CHD6 | FAT3 | 20 | 11 | -1 | 1 | 9 | 4 | 4 | 0.61 | 40085904 | 92613897 | tier1 | Out-of-frame | 3630 | NA | 0.36136 |
| LUAD | TCGA-50-6592-01A | TCGA-50-6592 | CHIC2|MANBA | CHIC2 | MANBA | 4 | 4 | -1 | -1 | 5 | 3 | 3 | 1.5 | 54915122 | 103611928 | tier1 | Out-of-frame | 3679 | NA | 0.35711 |
| LUAD | TCGA-05-5425-01A | TCGA-05-5425 | CHKA|GDPD5 | CHKA | GDPD5 | 11 | 11 | -1 | -1 | 3 | 4 | 4 | 1.3 | 67842184 | 75173934 | tier1 | In-frame | 3683 | NA | 0.35021 |
| LUAD | TCGA-78-8662-01A | TCGA-78-8662 | CHST3|CDH23 | CHST3 | CDH23 | 10 | 10 | 1 | 1 | 4 | 7 | 6 | 0.23 | 73724452 | 73571072 | tier1 | 5UTR-CDS | 3713 | NA | 0.35908 |
| LUAD | TCGA-38-4632-01A | TCGA-38-4632 | CHST8|KCNJ15 | CHST8 | KCNJ15 | 19 | 21 | 1 | 1 | 5 | 5 | 5 | 3.1 | 34180297 | 39668848 | tier1 | CDS-5UTR | 3715 | NA | 0.3528 |
| LUAD | TCGA-78-7148-01A | TCGA-78-7148 | CLDN4|UTRN | CLDN4 | UTRN | 7 | 6 | 1 | 1 | 2 | 6 | 3 | 0.53 | 73247014 | 144665237 | tier3 | NA | 3773 | NA | 0.37061 |
| LUAD | TCGA-38-4630-01A | TCGA-38-4630 | CLIC4|GRHL3 | CLIC4 | GRHL3 | 1 | 1 | 1 | 1 | 147 | 141 | 132 | 0.13 | 25072116 | 24671387 | tier1 | In-frame | 3790 | non-validated | 0.36028 |
| LUAD | TCGA-55-7913-01B | TCGA-55-7913 | CLIC6|ITSN1 | CLIC6 | ITSN1 | 21 | 21 | 1 | 1 | 4 | 2 | 2 | 2.3 | 36043061 | 35254547 | tier1 | In-frame | 3793 | NA | 0.37973 |
| LUAD | TCGA-69-7979-01A | TCGA-69-7979 | CLOCK|PDGFRA | CLOCK | PDGFRA | 4 | 4 | -1 | 1 | 4 | 2 | 2 | 1.3 | 56376079 | 55153597 | tier1 | 5UTR-CDS | 3826 | NA | 0.38296 |
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