Transcript Fusion
The transcript fusion data of TCGA were retrieved from the TumorFusions database.
List of the transcript fusions of the GESPs in each cancer type
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| Cancer Type | TCGA_barcode | Patient | Fusion_transcript | Gene_A | Gene_B | Chr_A | Chr_B | Strand_A | Strand_B | #_Discordant_Pairs | #_JSR | #_perfect_JSR | Evalue | Junction_A | Junction_B | Tier | Frame | TN | WGS_validation | Centrality |
| LUAD | TCGA-55-1596-01A | TCGA-55-1596 | C10orf112|GPR158 | C10orf112 | GPR158 | 10 | 10 | 1 | 1 | 2 | 2 | 2 | 1.2 | 19572110 | 25755580 | tier2 | Out-of-frame | 2305 | non-validated | 0 |
| LUAD | TCGA-50-5049-01A | TCGA-50-5049 | C12orf28|MDM2 | C12orf28 | MDM2 | 12 | 12 | 1 | 1 | 2 | 1 | 1 | 0.067 | 70219343 | 69214105 | tier2 | 5UTR-CDS | 2413 | NA | 0 |
| LUAD | TCGA-50-6673-01A | TCGA-50-6673 | C17orf63|UNC5D | C17orf63 | UNC5D | 17 | 8 | -1 | 1 | 44 | 23 | 20 | 0.031 | 27139227 | 35608100 | tier1 | 5UTR-CDS | 2524 | NA | 0 |
| LUAD | TCGA-91-6836-01A | TCGA-91-6836 | C1orf159|SDF4 | C1orf159 | SDF4 | 1 | 1 | -1 | -1 | 13 | 10 | 9 | 0.005 | 1025733 | 1164326 | tier1 | CDS-5UTR | 2592 | NA | 0 |
| LUAD | TCGA-91-6835-01A | TCGA-91-6835 | C1QA|CD74 | C1QA | CD74 | 1 | 5 | 1 | -1 | 2 | 1 | 1 | 0.069 | 22965442 | 149792314 | tier3 | NA | 2624 | NA | 0.37466 |
| LUAD | TCGA-44-A479-01A | TCGA-44-A479 | C21orf63|C20orf132 | C21orf63 | C20orf132 | 21 | 20 | 1 | -1 | 4 | 6 | 6 | 0.85 | 33785321 | 35742548 | tier1 | Out-of-frame | 2658 | NA | 0 |
| LUAD | TCGA-44-6147-01A | TCGA-44-6147 | C22orf32|NFAM1 | C22orf32 | NFAM1 | 22 | 22 | 1 | -1 | 5 | 5 | 3 | 0.31 | 42475958 | 42783084 | tier1 | In-frame | 2669 | non-validated | 0 |
| LUAD | TCGA-67-3774-01A | TCGA-67-3774 | C2CD3|NCAM1 | C2CD3 | NCAM1 | 11 | 11 | -1 | 1 | 3 | 1 | 1 | 0.034 | 73739332 | 113073101 | tier2 | CDS-5UTR | 2678 | NA | 0.37633 |
| LUAD | TCGA-49-4505-01A | TCGA-49-4505 | C5orf41|SLIT3 | C5orf41 | SLIT3 | 5 | 5 | 1 | -1 | 4 | 1 | 1 | 0.22 | 172483482 | 168271660 | tier2 | 5UTR-CDS | 2734 | NA | 0 |
| LUAD | TCGA-38-4630-01A | TCGA-38-4630 | C6orf186|SLC22A16 | C6orf186 | SLC22A16 | 6 | 6 | -1 | -1 | 38 | 16 | 16 | 0.95 | 110620125 | 110778220 | tier1 | Out-of-frame | 2758 | non-validated | 0 |
| LUAD | TCGA-38-4632-01A | TCGA-38-4632 | CADM1|ARCN1 | CADM1 | ARCN1 | 11 | 11 | -1 | 1 | 12 | 12 | 8 | 0.51 | 115374989 | 118468422 | tier1 | Out-of-frame | 2883 | NA | 0.3729 |
| LUAD | TCGA-69-7760-01A | TCGA-69-7760 | CAMK2B|KIAA0146 | CAMK2B | KIAA0146 | 7 | 8 | -1 | 1 | 18 | 4 | 3 | 0.18 | 44364956 | 48308936 | tier1 | Out-of-frame | 2920 | NA | 0.38689 |
| LUAD | TCGA-55-6978-01A | TCGA-55-6978 | CAPNS1|CHD1 | CAPNS1 | CHD1 | 19 | 5 | 1 | -1 | 2 | 24 | 18 | 1.1 | 36641254 | 98219587 | tier4 | NA | 2969 | NA | 0.37045 |
| LUAD | TCGA-78-7220-01A | TCGA-78-7220 | CAPZA2|MET | CAPZA2 | MET | 7 | 7 | 1 | 1 | 45 | 22 | 18 | 0.16 | 116528244 | 116414935 | tier1 | In-frame | 2980 | NA | 0.3779 |
| LUAD | TCGA-71-8520-01A | TCGA-71-8520 | CASP10|CFLAR | CASP10 | CFLAR | 2 | 2 | 1 | 1 | 2 | 2 | 2 | 0.93 | 202070696 | 201994452 | tier3 | CDS-5UTR | 3018 | NA | 0.37568 |
| LUAD | TCGA-75-7025-01A | TCGA-75-7025 | CAST|CDHR3 | CAST | CDHR3 | 5 | 7 | 1 | 1 | 2 | 2 | 1 | 0.025 | 96108937 | 105668108 | tier3 | 3UTR-CDS | 3027 | NA | 0.35582 |
| LUAD | TCGA-91-8499-01A | TCGA-91-8499 | CBLL1|SLC26A4 | CBLL1 | SLC26A4 | 7 | 7 | 1 | 1 | 3 | 2 | 2 | 0.41 | 107389492 | 107302084 | tier1 | CDS-5UTR | 3081 | NA | 0.3551 |
| LUAD | TCGA-69-7979-01A | TCGA-69-7979 | CCDC126|OSBPL3 | CCDC126 | OSBPL3 | 7 | 7 | 1 | -1 | 3 | 3 | 3 | 0.049 | 23651172 | 24932240 | tier1 | CDS-5UTR | 3110 | NA | 0.36712 |
| LUAD | TCGA-64-5815-01A | TCGA-64-5815 | CCDC6|ANK3 | CCDC6 | ANK3 | 10 | 10 | -1 | -1 | 5 | 4 | 4 | 0.072 | 61665880 | 61789584 | tier1 | CDS-3UTR | 3154 | NA | 0.37389 |
| LUAD | TCGA-05-4415-01A | TCGA-05-4415 | CCDC91|NTSR1 | CCDC91 | NTSR1 | 12 | 20 | 1 | 1 | 9 | 4 | 4 | 0.4 | 28544344 | 61386037 | tier1 | In-frame | 3194 | NA | 0.36436 |
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