TCSA Transcript fusion

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Transcript Fusion

The transcript fusion data of TCGA were retrieved from the TumorFusions database.

List of the transcript fusions of the GESPs in each cancer type

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Cancer Type	TCGA_barcode	Patient	Fusion_transcript	Gene_A	Gene_B	Chr_A	Chr_B	Strand_A	Strand_B	#_Discordant_Pairs	#_JSR	#_perfect_JSR	Evalue	Junction_A	Junction_B	Tier	Frame	TN	WGS_validation	Centrality
LUAD	TCGA-93-A4JQ-01A	TCGA-93-A4JQ	ATAD2\|LRP12	ATAD2	LRP12	8	8	-1	-1	7	17	16	0.005	124408427	105521302	tier1	Out-of-frame	1578	NA	0.3681
LUAD	TCGA-78-7146-01A	TCGA-78-7146	ATF6\|GJA5	ATF6	GJA5	1	1	1	-1	6	6	4	0.02	161751789	147231379	tier1	CDS-5UTR	1599	non-validated	0.37706
LUAD	TCGA-44-2655-01A	TCGA-44-2655	ATP11A\|C13orf35	ATP11A	C13orf35	13	13	1	1	3	5	5	0.2	113439571	113337588	tier1	Out-of-frame	1664	NA	0
LUAD	TCGA-MN-A4N1-01A	TCGA-MN-A4N1	ATP11A\|C13orf35	ATP11A	C13orf35	13	13	1	1	9	8	8	0.2	113439571	113337588	tier1	Out-of-frame	1666	NA	0
LUAD	TCGA-86-8281-01A	TCGA-86-8281	ATP1B1\|RCSD1	ATP1B1	RCSD1	1	1	1	1	285	302	277	0.083	169099328	167653137	tier1	In-frame	1698	NA	0.35868
LUAD	TCGA-44-2656-01A	TCGA-44-2656	ATP1B1\|SIAE	ATP1B1	SIAE	1	11	1	-1	2	2	1	0.043	169101960	124543777	tier2	3UTR-5UTR	1699	non-validated	0.35356
LUAD	TCGA-05-4398-01A	TCGA-05-4398	ATP2B4\|ERBB4	ATP2B4	ERBB4	1	2	1	-1	16	18	5	0.092	203596347	212989628	tier1	5UTR-CDS	1723	validated	0.38879
LUAD	TCGA-91-7771-01A	TCGA-91-7771	B4GALT1\|BAG1	B4GALT1	BAG1	9	9	-1	-1	46	27	26	0.17	33166756	33262828	tier4	In-frame	1866	NA	0.37586
LUAD	TCGA-75-6214-01A	TCGA-75-6214	B4GALT5\|TOX2	B4GALT5	TOX2	20	20	-1	1	10	24	23	0.13	48330113	42602007	tier1	Out-of-frame	1881	NA	0.34089
LUAD	TCGA-67-3774-01A	TCGA-67-3774	BAZ2A\|ACVR1B	BAZ2A	ACVR1B	12	12	-1	1	14	11	11	0.41	57023909	52369049	tier1	5UTR-5UTR	1939	NA	0.38814
LUAD	TCGA-91-8496-01A	TCGA-91-8496	BBS2\|ADAT1	BBS2	ADAT1	16	16	-1	-1	4	3	3	0.65	56539862	75637069	tier1	Out-of-frame	1950	NA	0.34785
LUAD	TCGA-NJ-A4YF-01A	TCGA-NJ-A4YF	BBS9\|AVL9	BBS9	AVL9	7	7	1	1	3	1	1	1	33217203	33078454	tier3	Out-of-frame	1954	NA	0.33178
LUAD	TCGA-38-4630-01A	TCGA-38-4630	BCAP31\|PDZD4	BCAP31	PDZD4	X	X	-1	-1	99	69	67	0.019	152986327	153074050	tier1	Out-of-frame	1965	non-validated	0.355
LUAD	TCGA-44-6774-01A	TCGA-44-6774	BGN\|UTRN	BGN	UTRN	X	6	1	1	2	50	46	0.087	152775004	144665237	tier3	NA	2085	NA	0.37406
LUAD	TCGA-55-7911-01A	TCGA-55-7911	BMPR2\|AC079354.1	BMPR2	AC079354.1	2	2	1	1	12	6	6	0.1	203242273	203003155	tier1	CDS-3UTR	2139	NA	0.37696
LUAD	TCGA-78-7539-01A	TCGA-78-7539	BMPR2\|C2orf67	BMPR2	C2orf67	2	2	1	-1	28	17	16	0.64	203242273	210962931	tier1	Out-of-frame	2141	NA	0
LUAD	TCGA-78-7159-01A	TCGA-78-7159	BPIFA1\|CLDN7	BPIFA1	CLDN7	20	17	1	-1	2	2	2	0.27	31831115	7166264	tier3	3UTR-5UTR	2154	NA	0.34955
LUAD	TCGA-80-5608-01A	TCGA-80-5608	BPIFA1\|CLDN7	BPIFA1	CLDN7	20	17	1	-1	2	2	2	0.27	31831115	7166264	tier3	3UTR-5UTR	2155	NA	0.34955
LUAD	TCGA-44-7660-01A	TCGA-44-7660	BRD1\|MLC1	BRD1	MLC1	22	22	-1	-1	2	1	1	2.3	50187682	50523390	tier3	CDS-5UTR	2198	NA	0.37062
LUAD	TCGA-50-6673-01A	TCGA-50-6673	BSG\|PLEKHB2	BSG	PLEKHB2	19	2	1	1	2	3	1	0.025	583492	131876464	tier3	3UTR-5UTR	2249	NA	0.36501

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