Transcript Fusion
The transcript fusion data of TCGA were retrieved from the TumorFusions database.
List of the transcript fusions of the GESPs in each cancer type
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| Cancer Type | TCGA_barcode | Patient | Fusion_transcript | Gene_A | Gene_B | Chr_A | Chr_B | Strand_A | Strand_B | #_Discordant_Pairs | #_JSR | #_perfect_JSR | Evalue | Junction_A | Junction_B | Tier | Frame | TN | WGS_validation | Centrality |
| LUAD | TCGA-05-4249-01A | TCGA-05-4249 | AFF1|PTPN13 | AFF1 | PTPN13 | 4 | 4 | 1 | 1 | 3 | 4 | 4 | 0.83 | 87869723 | 87556405 | tier1 | CDS-5UTR | 581 | NA | 0.37171 |
| LUAD | TCGA-O1-A52J-01A | TCGA-O1-A52J | AFG3L2|TIAM1 | AFG3L2 | TIAM1 | 18 | 21 | -1 | -1 | 2 | 3 | 3 | 0.82 | 12337340 | 32503266 | tier2 | Out-of-frame | 598 | NA | 0.3882 |
| LUAD | TCGA-78-7153-01A | TCGA-78-7153 | AHDC1|ALCAM | AHDC1 | ALCAM | 1 | 3 | -1 | 1 | 2 | 4 | 1 | 1.1 | 27929908 | 105238911 | tier3 | 5UTR-CDS | 681 | NA | 0.36218 |
| LUAD | TCGA-97-7937-01A | TCGA-97-7937 | AHNAK|STIP1 | AHNAK | STIP1 | 11 | 11 | -1 | 1 | 35 | 28 | 25 | 0.15 | 62314132 | 63960550 | tier2 | 5UTR-CDS | 694 | NA | 0.37064 |
| LUAD | TCGA-50-6592-01A | TCGA-50-6592 | ANK2|ALPK1 | ANK2 | ALPK1 | 4 | 4 | 1 | 1 | 3 | 3 | 2 | 0.79 | 113825670 | 113359640 | tier1 | Out-of-frame | 898 | NA | 0.37169 |
| LUAD | TCGA-05-4426-01A | TCGA-05-4426 | ANKH|MXD3 | ANKH | MXD3 | 5 | 5 | -1 | -1 | 10 | 10 | 8 | 2.3 | 14741936 | 176737541 | tier1 | Out-of-frame | 917 | NA | 0.35708 |
| LUAD | TCGA-05-4395-01A | TCGA-05-4395 | ANKRD12|PTPRM | ANKRD12 | PTPRM | 18 | 18 | 1 | 1 | 20 | 6 | 6 | 2 | 9136963 | 8394474 | tier1 | 5UTR-CDS | 962 | non-validated | 0.37421 |
| LUAD | TCGA-86-6851-01A | TCGA-86-6851 | ANXA6|UTRN | ANXA6 | UTRN | 5 | 6 | -1 | 1 | 2 | 3 | 3 | 4 | 150480670 | 144665237 | tier3 | NA | 1048 | NA | 0.37051 |
| LUAD | TCGA-38-4632-01A | TCGA-38-4632 | APCDD1|TRAPPC8 | APCDD1 | TRAPPC8 | 18 | 18 | 1 | -1 | 4 | 4 | 4 | 2 | 10455036 | 29435770 | tier1 | Out-of-frame | 1114 | NA | 0.33336 |
| LUAD | TCGA-L9-A444-01A | TCGA-L9-A444 | APH1A|SLAMF1 | APH1A | SLAMF1 | 1 | 1 | -1 | -1 | 57 | 19 | 16 | 4.1 | 150239475 | 160580588 | tier1 | In-frame | 1115 | NA | 0.36995 |
| LUAD | TCGA-75-7025-01A | TCGA-75-7025 | APLP2|EIF2AK2 | APLP2 | EIF2AK2 | 11 | 2 | 1 | -1 | 2 | 167 | 126 | 0.11 | 130014699 | 37342384 | tier4 | NA | 1126 | NA | 0.38682 |
| LUAD | TCGA-55-7816-01A | TCGA-55-7816 | AQP1|CFB | AQP1 | CFB | 7 | 6 | 1 | 1 | 2 | 2 | 2 | 0.38 | 30965131 | 31913427 | tier3 | NA | 1166 | NA | 0.37306 |
| LUAD | TCGA-44-A4SU-01A | TCGA-44-A4SU | ARAP1|FADD | ARAP1 | FADD | 11 | 11 | -1 | 1 | 9 | 3 | 3 | 0.38 | 72412694 | 70052239 | tier1 | In-frame | 1173 | NA | 0.38439 |
| LUAD | TCGA-55-6642-01A | TCGA-55-6642 | ARHGEF12|CNTN5 | ARHGEF12 | CNTN5 | 11 | 11 | 1 | 1 | 4 | 4 | 2 | 0.62 | 120280159 | 99786786 | tier1 | In-frame | 1296 | NA | 0.38099 |
| LUAD | TCGA-86-7953-01A | TCGA-86-7953 | ARHGEF3|RHAG | ARHGEF3 | RHAG | 3 | 6 | -1 | -1 | 39 | 39 | 36 | 0.27 | 56916320 | 49587075 | tier2 | Out-of-frame | 1328 | NA | 0.36786 |
| LUAD | TCGA-O1-A52J-01A | TCGA-O1-A52J | ARHGEF7|ATP11A | ARHGEF7 | ATP11A | 13 | 13 | 1 | 1 | 2 | 2 | 2 | 1.7 | 111920017 | 113459271 | tier2 | Out-of-frame | 1331 | NA | 0.38091 |
| LUAD | TCGA-93-8067-01A | TCGA-93-8067 | ARRB1|DLG2 | ARRB1 | DLG2 | 11 | 11 | -1 | -1 | 4 | 3 | 3 | 0.94 | 75062632 | 84996409 | tier1 | Out-of-frame | 1446 | NA | 0.38412 |
| LUAD | TCGA-MP-A4TC-01A | TCGA-MP-A4TC | ARRB1|GDPD5 | ARRB1 | GDPD5 | 11 | 11 | -1 | -1 | 69 | 35 | 31 | 0.14 | 74993006 | 75173934 | tier1 | In-frame | 1451 | NA | 0.37652 |
| LUAD | TCGA-91-A4BC-01A | TCGA-91-A4BC | ASH1L|INSRR | ASH1L | INSRR | 1 | 1 | -1 | -1 | 11 | 11 | 8 | 0.62 | 155490891 | 156824095 | tier1 | Out-of-frame | 1521 | NA | 0.37451 |
| LUAD | TCGA-91-7771-01A | TCGA-91-7771 | ASXL1|TM9SF4 | ASXL1 | TM9SF4 | 20 | 20 | 1 | 1 | 4 | 5 | 4 | 0.083 | 30956926 | 30720816 | tier1 | CDS-5UTR | 1555 | NA | 0.34223 |
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