Transcript Fusion
The transcript fusion data of TCGA were retrieved from the TumorFusions database.
List of the transcript fusions of the GESPs in each cancer type
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| Cancer Type | TCGA_barcode | Patient | Fusion_transcript | Gene_A | Gene_B | Chr_A | Chr_B | Strand_A | Strand_B | #_Discordant_Pairs | #_JSR | #_perfect_JSR | Evalue | Junction_A | Junction_B | Tier | Frame | TN | WGS_validation | Centrality |
| LIHC | TCGA-BC-A10R-01A | TCGA-BC-A10R | VNN1|C6orf192 | VNN1 | C6orf192 | 6 | 6 | -1 | -1 | 14 | 12 | 11 | 0.26 | 133032848 | 133091475 | tier1 | In-frame | 19601 | NA | 0 |
| LIHC | TCGA-DD-AA3A-01A | TCGA-DD-AA3A | WASF3|ATP8A2 | WASF3 | ATP8A2 | 13 | 13 | 1 | 1 | 3 | 6 | 6 | 0.13 | 27131956 | 26411301 | tier1 | 5UTR-CDS | 19737 | NA | 0 |
| LIHC | TCGA-BC-A217-01A | TCGA-BC-A217 | WDR37|AHNAK | WDR37 | AHNAK | 10 | 11 | 1 | -1 | 87 | 17 | 14 | 0.25 | 1130478 | 62259303 | tier1 | Out-of-frame | 19771 | validated | 0 |
| LIHC | TCGA-DD-AAD0-01A | TCGA-DD-AAD0 | WRN|NRG1 | WRN | NRG1 | 8 | 8 | 1 | 1 | 2 | 5 | 5 | 0.048 | 31024746 | 32585467 | tier2 | Out-of-frame | 19910 | NA | 0 |
| LIHC | TCGA-EP-A2KA-01A | TCGA-EP-A2KA | WWP1|LRRCC1 | WWP1 | LRRCC1 | 8 | 8 | 1 | 1 | 10 | 26 | 25 | 0.062 | 87355159 | 86053617 | tier1 | 5UTR-CDS | 19933 | non-validated | 0 |
| LIHC | TCGA-G3-A25U-01A | TCGA-G3-A25U | XPR1|NME7 | XPR1 | NME7 | 1 | 1 | 1 | -1 | 192 | 133 | 126 | 0.14 | 180601406 | 169138792 | tier1 | In-frame | 19977 | NA | 0 |
| LIHC | TCGA-BC-A10T-01A | TCGA-BC-A10T | XRCC5|ABCB1 | XRCC5 | ABCB1 | 2 | 7 | 1 | -1 | 40 | 32 | 32 | 0.015 | 216997110 | 87133765 | tier1 | In-frame | 19982 | NA | 0 |
| LIHC | TCGA-ED-A82E-01A | TCGA-ED-A82E | YIPF3|SERPING1 | YIPF3 | SERPING1 | 6 | 11 | -1 | 1 | 2 | 2 | 1 | 0.12 | 43480880 | 57365161 | tier4 | NA | 20037 | NA | 0 |
| LIHC | TCGA-EP-A2KA-01A | TCGA-EP-A2KA | ZBTB20|LSAMP | ZBTB20 | LSAMP | 3 | 3 | -1 | -1 | 5 | 3 | 3 | 0.81 | 114519948 | 115571464 | tier1 | 5UTR-CDS | 20091 | validated | 0 |
| LIHC | TCGA-2Y-A9H6-01A | TCGA-2Y-A9H6 | ZBTB20|PTPRD | ZBTB20 | PTPRD | 3 | 9 | -1 | -1 | 2 | 2 | 2 | 0.11 | 114519948 | 8733946 | tier3 | 5UTR-5UTR | 20097 | NA | 0 |
| LIHC | TCGA-ZS-A9CF-02A | TCGA-ZS-A9CF | ZRANB3|LCT | ZRANB3 | LCT | 2 | 2 | -1 | -1 | 2 | 2 | 2 | 0.01 | 136288697 | 136567563 | tier1 | 5UTR-CDS | 20709 | NA | 0 |
| LUAD | TCGA-MP-A4TA-01A | TCGA-MP-A4TA | ABCB8|NOS3 | ABCB8 | NOS3 | 7 | 7 | 1 | 1 | 72 | 36 | 27 | 0.06 | 150725697 | 150706018 | tier1 | Out-of-frame | 51 | NA | 0.3738 |
| LUAD | TCGA-69-7979-01A | TCGA-69-7979 | ABCC4|COL4A2 | ABCC4 | COL4A2 | 13 | 13 | -1 | 1 | 31 | 25 | 23 | 1.3 | 95822786 | 111077081 | tier1 | In-frame | 65 | NA | 0.36578 |
| LUAD | TCGA-44-2668-01A | TCGA-44-2668 | AC040980.1|KIAA0195 | AC040980.1 | KIAA0195 | 17 | 17 | 1 | 1 | 6 | 2 | 2 | 0.19 | 73975592 | 73467881 | tier1 | 5UTR-5UTR | 190 | non-validated | 0.32687 |
| LUAD | TCGA-78-7542-01A | TCGA-78-7542 | ACTB|COL17A1 | ACTB | COL17A1 | 7 | 10 | -1 | -1 | 4 | 3 | 2 | 0.39 | 5567255 | 105845629 | tier1 | NA | 336 | NA | 0.37621 |
| LUAD | TCGA-44-7660-01A | TCGA-44-7660 | ACVR1|CCDC148 | ACVR1 | CCDC148 | 2 | 2 | -1 | -1 | 5 | 11 | 6 | 0.34 | 158674897 | 159035508 | tier1 | 5UTR-CDS | 391 | NA | 0.37698 |
| LUAD | TCGA-86-A4D0-01A | TCGA-86-A4D0 | ADAM2|MTMR2 | ADAM2 | MTMR2 | 8 | 11 | -1 | -1 | 6 | 1 | 1 | 0.46 | 39603991 | 95598840 | tier2 | Out-of-frame | 412 | NA | 0.35634 |
| LUAD | TCGA-50-5933-01A | TCGA-50-5933 | ADAM9|RNF170 | ADAM9 | RNF170 | 8 | 8 | 1 | -1 | 11 | 10 | 8 | 0.046 | 38854679 | 42743014 | tier1 | CDS-5UTR | 424 | NA | 0.37684 |
| LUAD | TCGA-44-7660-01A | TCGA-44-7660 | ADAM9|TACC1 | ADAM9 | TACC1 | 8 | 8 | 1 | 1 | 4 | 2 | 1 | 0.31 | 38865502 | 38602413 | tier3 | CDS-5UTR | 425 | NA | 0.37886 |
| LUAD | TCGA-62-8395-01A | TCGA-62-8395 | ADAMTS9|CHL1 | ADAMTS9 | CHL1 | 3 | 3 | -1 | 1 | 2 | 2 | 1 | 0.014 | 64619374 | 447178 | tier3 | Out-of-frame | 444 | NA | 0.35713 |
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