Transcript Fusion
The transcript fusion data of TCGA were retrieved from the TumorFusions database.
List of the transcript fusions of the GESPs in each cancer type
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| Cancer Type | TCGA_barcode | Patient | Fusion_transcript | Gene_A | Gene_B | Chr_A | Chr_B | Strand_A | Strand_B | #_Discordant_Pairs | #_JSR | #_perfect_JSR | Evalue | Junction_A | Junction_B | Tier | Frame | TN | WGS_validation | Centrality |
| LIHC | TCGA-KR-A7K8-01A | TCGA-KR-A7K8 | TM9SF3|AVPI1 | TM9SF3 | AVPI1 | 10 | 10 | -1 | -1 | 3 | 2 | 2 | 1.1 | 98319416 | 99437782 | tier1 | Out-of-frame | 17871 | NA | 0 |
| LIHC | TCGA-FV-A3I1-01A | TCGA-FV-A3I1 | TMEM131|RAPGEF4 | TMEM131 | RAPGEF4 | 2 | 2 | -1 | 1 | 2 | 3 | 3 | 1 | 98458278 | 173855538 | tier3 | In-frame | 17958 | non-validated | 0 |
| LIHC | TCGA-BW-A5NO-01A | TCGA-BW-A5NO | TMEM223|SLC22A8 | TMEM223 | SLC22A8 | 11 | 11 | -1 | -1 | 3 | 2 | 2 | 0.028 | 62559151 | 62761350 | tier1 | In-frame | 18012 | non-validated | 0 |
| LIHC | TCGA-MI-A75I-01A | TCGA-MI-A75I | TMEM63B|POLR1C | TMEM63B | POLR1C | 6 | 6 | 1 | 1 | 2 | 2 | 2 | 0.55 | 44108835 | 43488013 | tier3 | Out-of-frame | 18044 | NA | 0 |
| LIHC | TCGA-G3-AAUZ-01A | TCGA-G3-AAUZ | TMPRSS2|PHF12 | TMPRSS2 | PHF12 | 21 | 17 | -1 | -1 | 3 | 6 | 6 | 0.045 | 42860321 | 27235899 | tier1 | In-frame | 18283 | NA | 0 |
| LIHC | TCGA-BC-A216-01A | TCGA-BC-A216 | TMPRSS6|MPST | TMPRSS6 | MPST | 22 | 22 | -1 | 1 | 11 | 15 | 13 | 0.02 | 37491591 | 37420233 | tier1 | CDS-5UTR | 18288 | validated | 0 |
| LIHC | TCGA-2Y-A9GT-01A | TCGA-2Y-A9GT | TMPRSS6|PPP6R3 | TMPRSS6 | PPP6R3 | 22 | 11 | -1 | 1 | 642 | 608 | 560 | 0.59 | 37499256 | 68377372 | tier1 | Out-of-frame | 18289 | NA | 0 |
| LIHC | TCGA-2Y-A9H2-01A | TCGA-2Y-A9H2 | TMPRSS6|PPP6R3 | TMPRSS6 | PPP6R3 | 22 | 11 | -1 | 1 | 89 | 101 | 93 | 0.59 | 37499256 | 68377372 | tier1 | Out-of-frame | 18290 | NA | 0 |
| LIHC | TCGA-BC-A3KG-01A | TCGA-BC-A3KG | TRAF2|MAMDC4 | TRAF2 | MAMDC4 | 9 | 9 | 1 | 1 | 35 | 20 | 15 | 0.33 | 139804446 | 139748663 | tier1 | Out-of-frame | 18543 | NA | 0 |
| LIHC | TCGA-2Y-A9H0-01A | TCGA-2Y-A9H0 | TRIM29|PAK1 | TRIM29 | PAK1 | 11 | 11 | -1 | -1 | 80 | 65 | 63 | 1.5 | 120055918 | 77034405 | tier1 | NA | 18628 | NA | 0 |
| LIHC | TCGA-PD-A5DF-01A | TCGA-PD-A5DF | TRIT1|ABCA10 | TRIT1 | ABCA10 | 1 | 17 | -1 | -1 | 6 | 1 | 1 | 0.039 | 40348990 | 67193263 | tier2 | Out-of-frame | 18695 | non-validated | 0 |
| LIHC | TCGA-DD-A3A5-01A | TCGA-DD-A3A5 | TRMU|TMEM184B | TRMU | TMEM184B | 22 | 22 | 1 | -1 | 7 | 1 | 1 | 0.071 | 46733841 | 38627340 | tier2 | Out-of-frame | 18712 | NA | 0 |
| LIHC | TCGA-UB-A7MA-01A | TCGA-UB-A7MA | TUFT1|CGN | TUFT1 | CGN | 1 | 1 | 1 | 1 | 2 | 2 | 2 | 0.046 | 151512902 | 151490982 | tier3 | CDS-5UTR | 18954 | NA | 0 |
| LIHC | TCGA-EP-A2KA-01A | TCGA-EP-A2KA | UBE2D2|CTNNA1 | UBE2D2 | CTNNA1 | 5 | 5 | 1 | 1 | 16 | 11 | 10 | 0.11 | 138980020 | 138221901 | tier1 | Out-of-frame | 19056 | validated | 0 |
| LIHC | TCGA-DD-A1EJ-01A | TCGA-DD-A1EJ | UBE2K|SLC9B2 | UBE2K | SLC9B2 | 4 | 4 | 1 | -1 | 7 | 5 | 5 | 2 | 39757359 | 103952965 | tier1 | Out-of-frame | 19087 | validated | 0 |
| LIHC | TCGA-BC-A5W4-01A | TCGA-BC-A5W4 | UHRF2|OLFM1 | UHRF2 | OLFM1 | 9 | 9 | 1 | 1 | 5 | 2 | 2 | 0.32 | 6413643 | 137987710 | tier1 | In-frame | 19216 | NA | 0 |
| LIHC | TCGA-RC-A6M4-01A | TCGA-RC-A6M4 | USP39|VAMP8 | USP39 | VAMP8 | 2 | 2 | 1 | 1 | 78 | 88 | 75 | 0.75 | 85852814 | 85808699 | tier1 | In-frame | 19384 | NA | 0 |
| LIHC | TCGA-CC-A3MA-01A | TCGA-CC-A3MA | USP54|TSPAN15 | USP54 | TSPAN15 | 10 | 10 | -1 | 1 | 2 | 14 | 14 | 0.031 | 75385695 | 71243447 | tier2 | NA | 19421 | NA | 0 |
| LIHC | TCGA-EP-A2KA-01A | TCGA-EP-A2KA | UTRN|AIG1 | UTRN | AIG1 | 6 | 6 | 1 | 1 | 33 | 11 | 10 | 0.058 | 144860579 | 143457972 | tier1 | In-frame | 19454 | non-validated | 0 |
| LIHC | TCGA-ZP-A9D0-01A | TCGA-ZP-A9D0 | VAPA|RAB31 | VAPA | RAB31 | 18 | 18 | 1 | 1 | 24 | 25 | 17 | 0.97 | 9937063 | 9775275 | tier1 | In-frame | 19503 | NA | 0 |
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