Transcript Fusion
The transcript fusion data of TCGA were retrieved from the TumorFusions database.
List of the transcript fusions of the GESPs in each cancer type
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| Cancer Type | TCGA_barcode | Patient | Fusion_transcript | Gene_A | Gene_B | Chr_A | Chr_B | Strand_A | Strand_B | #_Discordant_Pairs | #_JSR | #_perfect_JSR | Evalue | Junction_A | Junction_B | Tier | Frame | TN | WGS_validation | Centrality |
| LIHC | TCGA-DD-A115-01A | TCGA-DD-A115 | SLCO2B1|HNF4A | SLCO2B1 | HNF4A | 11 | 20 | 1 | 1 | 17 | 15 | 13 | 0.15 | 74862442 | 43034698 | tier1 | In-frame | 16310 | NA | 0 |
| LIHC | TCGA-DD-A4NO-01A | TCGA-DD-A4NO | SMOX|SLC24A3 | SMOX | SLC24A3 | 20 | 20 | 1 | 1 | 9 | 2 | 2 | 0.31 | 4129624 | 19634706 | tier1 | 5UTR-CDS | 16431 | NA | 0 |
| LIHC | TCGA-XR-A8TG-01A | TCGA-XR-A8TG | SNX29|TNFRSF17 | SNX29 | TNFRSF17 | 16 | 16 | 1 | 1 | 4 | 2 | 2 | 0.002 | 12155503 | 12060052 | tier1 | In-frame | 16549 | NA | 0 |
| LIHC | TCGA-DD-AAW0-01A | TCGA-DD-AAW0 | SOCS5|SLC8A1 | SOCS5 | SLC8A1 | 2 | 2 | 1 | -1 | 2 | 7 | 6 | 3.6 | 46926588 | 40680489 | tier2 | NA | 16574 | NA | 0 |
| LIHC | TCGA-CC-5264-01A | TCGA-CC-5264 | SPEF2|SLC6A18 | SPEF2 | SLC6A18 | 5 | 5 | 1 | 1 | 2 | 4 | 3 | 1.6 | 35649527 | 1242822 | tier3 | In-frame | 16707 | NA | 0 |
| LIHC | TCGA-LG-A6GG-01A | TCGA-LG-A6GG | ST3GAL3|TGFBR3 | ST3GAL3 | TGFBR3 | 1 | 1 | 1 | -1 | 15 | 1 | 1 | 2 | 44257820 | 92195530 | tier2 | In-frame | 16937 | NA | 0 |
| LIHC | TCGA-EP-A2KA-01A | TCGA-EP-A2KA | ST3GAL4|HYLS1 | ST3GAL4 | HYLS1 | 11 | 11 | 1 | 1 | 3 | 1 | 1 | 1.7 | 126226197 | 125768999 | tier3 | 5UTR-5UTR | 16942 | validated | 0 |
| LIHC | TCGA-DD-AAE2-01A | TCGA-DD-AAE2 | ST7|MET | ST7 | MET | 7 | 7 | 1 | 1 | 10 | 5 | 4 | 0.69 | 116830990 | 116371722 | tier1 | In-frame | 16965 | NA | 0 |
| LIHC | TCGA-ZS-A9CF-01A | TCGA-ZS-A9CF | STK35|GP5 | STK35 | GP5 | 20 | 3 | 1 | -1 | 7 | 2 | 2 | 0.84 | 2098061 | 194119013 | tier1 | 3UTR-5UTR | 17081 | NA | 0 |
| LIHC | TCGA-CC-A8HS-01A | TCGA-CC-A8HS | SULF2|BCAS1 | SULF2 | BCAS1 | 20 | 20 | -1 | -1 | 3 | 5 | 4 | 1.1 | 46305238 | 52645511 | tier1 | Out-of-frame | 17175 | NA | 0 |
| LIHC | TCGA-DD-A1EK-01A | TCGA-DD-A1EK | SUV420H1|C11orf24 | SUV420H1 | C11orf24 | 11 | 11 | -1 | -1 | 5 | 6 | 5 | 1.5 | 67980944 | 68035719 | tier1 | 5UTR-5UTR | 17204 | NA | 0 |
| LIHC | TCGA-FV-A3R3-01A | TCGA-FV-A3R3 | SYF2|RHD | SYF2 | RHD | 1 | 1 | -1 | 1 | 10 | 2 | 2 | 0.47 | 25558595 | 25611064 | tier1 | Out-of-frame | 17230 | non-validated | 0 |
| LIHC | TCGA-G3-A25X-01A | TCGA-G3-A25X | SYK|AUH | SYK | AUH | 9 | 9 | 1 | -1 | 6 | 1 | 1 | 0.98 | 93564175 | 94060358 | tier3 | 5UTR-CDS | 17232 | NA | 0 |
| LIHC | TCGA-UB-A7MA-01A | TCGA-UB-A7MA | TALDO1|EPS8L2 | TALDO1 | EPS8L2 | 11 | 11 | 1 | 1 | 18 | 9 | 9 | 0.16 | 760253 | 720062 | tier1 | Out-of-frame | 17360 | NA | 0 |
| LIHC | TCGA-ED-A7PX-01A | TCGA-ED-A7PX | TANC2|MRC2 | TANC2 | MRC2 | 17 | 17 | 1 | 1 | 5 | 5 | 4 | 0.72 | 61086987 | 60741909 | tier1 | In-frame | 17378 | NA | 0 |
| LIHC | TCGA-CC-A3MB-01A | TCGA-CC-A3MB | TCF7L1|NFASC | TCF7L1 | NFASC | 2 | 1 | 1 | 1 | 4 | 1 | 1 | 0.32 | 85361573 | 204913354 | tier4 | CDS-5UTR | 17600 | NA | 0 |
| LIHC | TCGA-DD-A4NL-01A | TCGA-DD-A4NL | TF|UTRN | TF | UTRN | 3 | 6 | 1 | 1 | 2 | 10 | 9 | 4.6 | 133497635 | 144665237 | tier3 | NA | 17693 | NA | 0 |
| LIHC | TCGA-BC-A3KF-01A | TCGA-BC-A3KF | TFR2|NCOR2 | TFR2 | NCOR2 | 7 | 12 | -1 | -1 | 9 | 7 | 5 | 0.97 | 100224386 | 124848345 | tier1 | Out-of-frame | 17726 | NA | 0 |
| LIHC | TCGA-RC-A6M3-01A | TCGA-RC-A6M3 | TGFBR1|COL15A1 | TGFBR1 | COL15A1 | 9 | 9 | 1 | 1 | 21 | 20 | 20 | 1.3 | 101910066 | 101777699 | tier1 | In-frame | 17739 | NA | 0 |
| LIHC | TCGA-2Y-A9H0-01A | TCGA-2Y-A9H0 | TM7SF3|SNX31 | TM7SF3 | SNX31 | 12 | 8 | -1 | -1 | 7 | 2 | 2 | 0.82 | 27167011 | 101612669 | tier1 | Out-of-frame | 17870 | NA | 0 |
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