Transcript Fusion
The transcript fusion data of TCGA were retrieved from the TumorFusions database.
List of the transcript fusions of the GESPs in each cancer type
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| Cancer Type | TCGA_barcode | Patient | Fusion_transcript | Gene_A | Gene_B | Chr_A | Chr_B | Strand_A | Strand_B | #_Discordant_Pairs | #_JSR | #_perfect_JSR | Evalue | Junction_A | Junction_B | Tier | Frame | TN | WGS_validation | Centrality |
| LIHC | TCGA-DD-A4NB-01A | TCGA-DD-A4NB | SERPINA1|CD46 | SERPINA1 | CD46 | 14 | 1 | -1 | 1 | 2 | 9 | 1 | 0.12 | 94844713 | 207940358 | tier4 | 3UTR-CDS | 15650 | non-validated | 0 |
| LIHC | TCGA-DD-A4NN-01A | TCGA-DD-A4NN | SERPINA1|CD46 | SERPINA1 | CD46 | 14 | 1 | -1 | 1 | 2 | 3 | 3 | 0.12 | 94844713 | 207940358 | tier3 | 3UTR-CDS | 15651 | NA | 0 |
| LIHC | TCGA-2V-A95S-01A | TCGA-2V-A95S | SERPINA1|CD63 | SERPINA1 | CD63 | 14 | 12 | -1 | -1 | 2 | 1 | 1 | 0.15 | 94844713 | 56123444 | tier3 | NA | 15652 | NA | 0 |
| LIHC | TCGA-RC-A6M6-01A | TCGA-RC-A6M6 | SERPINA1|CD63 | SERPINA1 | CD63 | 14 | 12 | -1 | -1 | 10 | 1 | 1 | 0.15 | 94844713 | 56123444 | tier4 | NA | 15653 | NA | 0 |
| LIHC | TCGA-DD-A3A4-01A | TCGA-DD-A3A4 | SERPINA1|CPD | SERPINA1 | CPD | 14 | 17 | -1 | 1 | 4 | 4 | 2 | 4 | 94844713 | 28783274 | tier1 | 3UTR-CDS | 15654 | NA | 0 |
| LIHC | TCGA-ED-A459-01A | TCGA-ED-A459 | SERPINA1|CPD | SERPINA1 | CPD | 14 | 17 | -1 | 1 | 2 | 13 | 5 | 4 | 94844713 | 28783274 | tier4 | 3UTR-CDS | 15655 | non-validated | 0 |
| LIHC | TCGA-ED-A66Y-01A | TCGA-ED-A66Y | SERPINA1|LGR4 | SERPINA1 | LGR4 | 14 | 11 | -1 | -1 | 2 | 1 | 1 | 0.66 | 94844726 | 27494322 | tier3 | 3UTR-5UTR | 15659 | NA | 0 |
| LIHC | TCGA-4R-AA8I-01A | TCGA-4R-AA8I | SFXN5|SLC8A1 | SFXN5 | SLC8A1 | 2 | 2 | -1 | -1 | 7 | 3 | 2 | 0.26 | 73247368 | 40404995 | tier1 | Out-of-frame | 15772 | NA | 0 |
| LIHC | TCGA-RC-A6M3-01A | TCGA-RC-A6M3 | SIM2|GRIK1 | SIM2 | GRIK1 | 21 | 21 | 1 | -1 | 2 | 3 | 3 | 0.57 | 38072221 | 31066382 | tier2 | In-frame | 15929 | NA | 0 |
| LIHC | TCGA-BC-A10R-01A | TCGA-BC-A10R | SLC12A7|CLPTM1L | SLC12A7 | CLPTM1L | 5 | 5 | -1 | -1 | 6 | 5 | 4 | 0.47 | 1073748 | 1331998 | tier1 | In-frame | 16012 | NA | 0 |
| LIHC | TCGA-2Y-A9H0-01A | TCGA-2Y-A9H0 | SLC12A7|SKIV2L2 | SLC12A7 | SKIV2L2 | 5 | 5 | -1 | 1 | 168 | 224 | 126 | 0.79 | 1057586 | 54720548 | tier1 | Out-of-frame | 16014 | NA | 0 |
| LIHC | TCGA-BC-A3KG-01A | TCGA-BC-A3KG | SLC12A7|TERT | SLC12A7 | TERT | 5 | 5 | -1 | -1 | 5 | 4 | 3 | 0.76 | 1111983 | 1282739 | tier1 | In-frame | 16015 | NA | 0 |
| LIHC | TCGA-ZS-A9CF-01A | TCGA-ZS-A9CF | SLC12A7|TERT | SLC12A7 | TERT | 5 | 5 | -1 | -1 | 12 | 9 | 8 | 0.76 | 1111983 | 1282739 | tier1 | In-frame | 16018 | NA | 0 |
| LIHC | TCGA-DD-AAVZ-01A | TCGA-DD-AAVZ | SLC20A2|ADORA3 | SLC20A2 | ADORA3 | 8 | 1 | -1 | -1 | 59 | 80 | 76 | 3 | 42396681 | 112031489 | tier1 | NA | 16056 | NA | 0 |
| LIHC | TCGA-BC-A8YO-01A | TCGA-BC-A8YO | SLC22A3|CYP20A1 | SLC22A3 | CYP20A1 | 6 | 2 | 1 | 1 | 5 | 5 | 5 | 0.39 | 160864774 | 204110569 | tier1 | Out-of-frame | 16076 | NA | 0 |
| LIHC | TCGA-CC-A1HT-01A | TCGA-CC-A1HT | SLC30A10|MEX3A | SLC30A10 | MEX3A | 1 | 1 | -1 | -1 | 2 | 2 | 2 | 0.11 | 220100370 | 156047473 | tier2 | In-frame | 16141 | non-validated | 0 |
| LIHC | TCGA-ED-A82E-01A | TCGA-ED-A82E | SLC38A1|UNKL | SLC38A1 | UNKL | 12 | 16 | -1 | -1 | 14 | 9 | 8 | 2.2 | 46622936 | 1453345 | tier1 | In-frame | 16178 | NA | 0 |
| LIHC | TCGA-BC-A10T-01A | TCGA-BC-A10T | SLC39A14|FAM110B | SLC39A14 | FAM110B | 8 | 8 | 1 | 1 | 20 | 28 | 27 | 0.16 | 22237027 | 59058466 | tier1 | NA | 16200 | NA | 0 |
| LIHC | TCGA-ZS-A9CF-02A | TCGA-ZS-A9CF | SLC39A14|XPO7 | SLC39A14 | XPO7 | 8 | 8 | 1 | 1 | 15 | 24 | 22 | 2.8 | 22224921 | 21856266 | tier1 | 5UTR-CDS | 16205 | NA | 0 |
| LIHC | TCGA-DD-A73C-01A | TCGA-DD-A73C | SLC7A2|TERT | SLC7A2 | TERT | 8 | 5 | 1 | -1 | 20 | 19 | 18 | 1.1 | 17359811 | 1282739 | tier1 | 5UTR-CDS | 16290 | NA | 0 |
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