Transcript Fusion
The transcript fusion data of TCGA were retrieved from the TumorFusions database.
List of the transcript fusions of the GESPs in each cancer type
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| Cancer Type | TCGA_barcode | Patient | Fusion_transcript | Gene_A | Gene_B | Chr_A | Chr_B | Strand_A | Strand_B | #_Discordant_Pairs | #_JSR | #_perfect_JSR | Evalue | Junction_A | Junction_B | Tier | Frame | TN | WGS_validation | Centrality |
| LIHC | TCGA-RC-A6M4-01A | TCGA-RC-A6M4 | PTPRG|FHIT | PTPRG | FHIT | 3 | 3 | 1 | -1 | 4 | 2 | 2 | 0.043 | 61734656 | 60807705 | tier1 | CDS-5UTR | 13862 | NA | 0.36774 |
| LIHC | TCGA-DD-AADC-01A | TCGA-DD-AADC | PTRF|HEATR6 | PTRF | HEATR6 | 17 | 17 | -1 | -1 | 4 | 2 | 2 | 0.15 | 40574645 | 58125749 | tier1 | In-frame | 13933 | NA | 0 |
| LIHC | TCGA-BC-A217-01A | TCGA-BC-A217 | PVR|IGSF23 | PVR | IGSF23 | 19 | 19 | 1 | 1 | 43 | 35 | 31 | 0.057 | 45157286 | 45127004 | tier1 | In-frame | 13969 | non-validated | 0 |
| LIHC | TCGA-ED-A7XO-01A | TCGA-ED-A7XO | PVRL2|CCL21 | PVRL2 | CCL21 | 19 | 9 | 1 | -1 | 35 | 31 | 30 | 0.024 | 45349870 | 34709894 | tier1 | In-frame | 13972 | NA | 0 |
| LIHC | TCGA-DD-A73F-01A | TCGA-DD-A73F | PXK|FLNB | PXK | FLNB | 3 | 3 | 1 | 1 | 56 | 22 | 20 | 3.3 | 58318817 | 58145281 | tier1 | In-frame | 13984 | NA | 0 |
| LIHC | TCGA-KR-A7K8-01A | TCGA-KR-A7K8 | RAB6A|GDPD5 | RAB6A | GDPD5 | 11 | 11 | -1 | -1 | 4 | 8 | 8 | 5.6 | 73471611 | 75201365 | tier1 | CDS-5UTR | 14118 | NA | 0 |
| LIHC | TCGA-DD-A11C-01A | TCGA-DD-A11C | RAP1A|C1orf162 | RAP1A | C1orf162 | 1 | 1 | 1 | 1 | 7 | 2 | 1 | 0.016 | 112162969 | 112018640 | tier2 | 5UTR-5UTR | 14267 | NA | 0 |
| LIHC | TCGA-DD-A73F-01A | TCGA-DD-A73F | RERE|SLC2A5 | RERE | SLC2A5 | 1 | 1 | -1 | -1 | 7 | 5 | 3 | 0.34 | 8877219 | 9107793 | tier1 | 5UTR-CDS | 14560 | NA | 0 |
| LIHC | TCGA-CC-A9FU-01A | TCGA-CC-A9FU | RFC1|CORIN | RFC1 | CORIN | 4 | 4 | -1 | -1 | 34 | 23 | 23 | 0.85 | 39343965 | 47680071 | tier1 | In-frame | 14585 | NA | 0 |
| LIHC | TCGA-BC-4072-01B | TCGA-BC-4072 | RFFL|ADAM32 | RFFL | ADAM32 | 17 | 8 | -1 | 1 | 17 | 11 | 8 | 0.67 | 33390595 | 39004649 | tier1 | 5UTR-CDS | 14589 | NA | 0 |
| LIHC | TCGA-DD-A4NA-01A | TCGA-DD-A4NA | RHPN2|SLC7A10 | RHPN2 | SLC7A10 | 19 | 19 | -1 | -1 | 724 | 461 | 409 | 0.91 | 33535155 | 33703908 | tier1 | In-frame | 14668 | non-validated | 0 |
| LIHC | TCGA-BC-A10T-01A | TCGA-BC-A10T | RLF|RTN4RL1 | RLF | RTN4RL1 | 1 | 17 | 1 | -1 | 2 | 5 | 4 | 0.7 | 40627308 | 1841102 | tier2 | Out-of-frame | 14707 | NA | 0 |
| LIHC | TCGA-DD-AADY-01A | TCGA-DD-AADY | RNF121|SLC22A8 | RNF121 | SLC22A8 | 11 | 11 | 1 | -1 | 10 | 6 | 6 | 0.2 | 71671937 | 62763624 | tier1 | Out-of-frame | 14747 | NA | 0 |
| LIHC | TCGA-5C-AAPD-01A | TCGA-5C-AAPD | RNF128|CXorf57 | RNF128 | CXorf57 | X | X | 1 | 1 | 2 | 1 | 1 | 0.009 | 105937638 | 105891543 | tier2 | Out-of-frame | 14755 | NA | 0 |
| LIHC | TCGA-DD-AAD6-01A | TCGA-DD-AAD6 | RNF213|SLC26A11 | RNF213 | SLC26A11 | 17 | 17 | 1 | 1 | 12 | 9 | 8 | 0.56 | 78324196 | 78225128 | tier1 | Out-of-frame | 14817 | NA | 0 |
| LIHC | TCGA-DD-AA3A-01A | TCGA-DD-AA3A | RNF6|NAALADL2 | RNF6 | NAALADL2 | 13 | 3 | -1 | 1 | 2 | 3 | 3 | 0.2 | 26792648 | 175455094 | tier3 | Out-of-frame | 14851 | NA | 0 |
| LIHC | TCGA-G3-A6UC-01A | TCGA-G3-A6UC | RPRD2|CA14 | RPRD2 | CA14 | 1 | 1 | 1 | 1 | 49 | 57 | 48 | 0.48 | 150337395 | 150236993 | tier1 | Out-of-frame | 15028 | NA | 0 |
| LIHC | TCGA-2Y-A9H0-01A | TCGA-2Y-A9H0 | RXRA|KCNT2 | RXRA | KCNT2 | 9 | 1 | 1 | -1 | 7 | 14 | 14 | 0.51 | 137218505 | 196461471 | tier1 | Out-of-frame | 15207 | NA | 0 |
| LIHC | TCGA-ED-A7XO-01A | TCGA-ED-A7XO | SCARB2|NIPSNAP1 | SCARB2 | NIPSNAP1 | 4 | 22 | -1 | -1 | 26 | 49 | 46 | 0.38 | 77134580 | 29957851 | tier1 | Out-of-frame | 15393 | NA | 0 |
| LIHC | TCGA-WJ-A86L-01A | TCGA-WJ-A86L | SEMA4B|ZNF710 | SEMA4B | ZNF710 | 15 | 15 | 1 | 1 | 20 | 11 | 10 | 0.18 | 90764997 | 90610342 | tier1 | CDS-5UTR | 15559 | NA | 0 |
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