Transcript Fusion
The transcript fusion data of TCGA were retrieved from the TumorFusions database.
List of the transcript fusions of the GESPs in each cancer type
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| Cancer Type | TCGA_barcode | Patient | Fusion_transcript | Gene_A | Gene_B | Chr_A | Chr_B | Strand_A | Strand_B | #_Discordant_Pairs | #_JSR | #_perfect_JSR | Evalue | Junction_A | Junction_B | Tier | Frame | TN | WGS_validation | Centrality |
| LIHC | TCGA-RC-A6M6-01A | TCGA-RC-A6M6 | OXR1|MET | OXR1 | MET | 8 | 7 | 1 | 1 | 8 | 9 | 8 | 1.1 | 107726213 | 116411552 | tier1 | In-frame | 12125 | NA | 0.37821 |
| LIHC | TCGA-BC-A217-01A | TCGA-BC-A217 | PAPPA2|ASTN1 | PAPPA2 | ASTN1 | 1 | 1 | 1 | -1 | 14 | 5 | 4 | 0.71 | 176640251 | 176863966 | tier1 | In-frame | 12259 | validated | 0.36347 |
| LIHC | TCGA-ZS-A9CF-02A | TCGA-ZS-A9CF | PDLIM1|SORBS1 | PDLIM1 | SORBS1 | 10 | 10 | -1 | -1 | 7 | 9 | 9 | 0.11 | 97006972 | 97144042 | tier1 | In-frame | 12552 | NA | 0.38115 |
| LIHC | TCGA-QA-A7B7-01A | TCGA-QA-A7B7 | PDLIM5|SMARCAD1 | PDLIM5 | SMARCAD1 | 4 | 4 | 1 | 1 | 39 | 55 | 52 | 0.31 | 95497185 | 95210624 | tier1 | Out-of-frame | 12559 | NA | 0.37871 |
| LIHC | TCGA-2Y-A9H0-01A | TCGA-2Y-A9H0 | PDXDC1|GPR56 | PDXDC1 | GPR56 | 16 | 16 | 1 | 1 | 8 | 22 | 22 | 0.046 | 15092262 | 57684165 | tier1 | CDS-5UTR | 12575 | NA | 0.35539 |
| LIHC | TCGA-2Y-A9H0-01A | TCGA-2Y-A9H0 | PHC3|SLC7A14 | PHC3 | SLC7A14 | 3 | 3 | -1 | -1 | 126 | 52 | 49 | 0.26 | 169896561 | 170185165 | tier1 | Out-of-frame | 12694 | NA | 0.34948 |
| LIHC | TCGA-BC-A10T-01A | TCGA-BC-A10T | PI4K2A|UBTD1 | PI4K2A | UBTD1 | 10 | 10 | 1 | 1 | 7 | 5 | 5 | 0.88 | 99344671 | 99329895 | tier1 | In-frame | 12777 | NA | 0.35691 |
| LIHC | TCGA-KR-A7K8-01A | TCGA-KR-A7K8 | PIK3AP1|AVPI1 | PIK3AP1 | AVPI1 | 10 | 10 | -1 | -1 | 5 | 5 | 5 | 0.86 | 98408416 | 99437782 | tier1 | Out-of-frame | 12828 | NA | 0.36606 |
| LIHC | TCGA-BC-4072-01B | TCGA-BC-4072 | PKN1|ANXA4 | PKN1 | ANXA4 | 19 | 2 | 1 | 1 | 72 | 36 | 31 | 2.9 | 14574965 | 70015186 | tier1 | In-frame | 12921 | NA | 0.3846 |
| LIHC | TCGA-DD-A1EB-01A | TCGA-DD-A1EB | PLXNB1|SLC26A6 | PLXNB1 | SLC26A6 | 3 | 3 | -1 | -1 | 10 | 8 | 8 | 0.058 | 48460986 | 48667144 | tier1 | Out-of-frame | 13070 | validated | 0.38138 |
| LIHC | TCGA-RC-A6M6-01A | TCGA-RC-A6M6 | PNPLA8|CFTR | PNPLA8 | CFTR | 7 | 7 | -1 | 1 | 13 | 10 | 7 | 0.076 | 108128203 | 117282492 | tier1 | In-frame | 13125 | NA | 0.37433 |
| LIHC | TCGA-G3-A25X-01A | TCGA-G3-A25X | POFUT1|HCK | POFUT1 | HCK | 20 | 20 | 1 | 1 | 70 | 38 | 37 | 0.41 | 30818864 | 30689120 | tier1 | Out-of-frame | 13131 | NA | 0.38197 |
| LIHC | TCGA-XR-A8TG-01A | TCGA-XR-A8TG | POMT1|PPAPDC3 | POMT1 | PPAPDC3 | 9 | 9 | 1 | 1 | 2 | 3 | 3 | 0.25 | 134386854 | 134183310 | tier2 | Out-of-frame | 13186 | NA | 0.33839 |
| LIHC | TCGA-2Y-A9H8-01A | TCGA-2Y-A9H8 | PPP1R3B|CSMD1 | PPP1R3B | CSMD1 | 8 | 8 | -1 | -1 | 8 | 3 | 3 | 0.68 | 9008857 | 3889621 | tier1 | 5UTR-CDS | 13381 | NA | 0.34526 |
| LIHC | TCGA-DD-AAEG-01A | TCGA-DD-AAEG | PPP6R3|LRP5 | PPP6R3 | LRP5 | 11 | 11 | 1 | 1 | 7 | 8 | 8 | 3.3 | 68363686 | 68115315 | tier1 | In-frame | 13460 | NA | 0.36875 |
| LIHC | TCGA-UB-A7ME-01A | TCGA-UB-A7ME | PRDM10|NT5E | PRDM10 | NT5E | 11 | 6 | -1 | 1 | 5 | 3 | 2 | 0.8 | 129788434 | 86194953 | tier1 | Out-of-frame | 13497 | NA | 0.35286 |
| LIHC | TCGA-2Y-A9H0-01A | TCGA-2Y-A9H0 | PRKCA|PPP4R4 | PRKCA | PPP4R4 | 17 | 14 | 1 | 1 | 3 | 3 | 3 | 0.78 | 64302245 | 94633881 | tier1 | NA | 13547 | NA | 0.38375 |
| LIHC | TCGA-LG-A9QC-01A | TCGA-LG-A9QC | PRKCA|RP11-540D14.8 | PRKCA | RP11-540D14.8 | 17 | 1 | 1 | 1 | 2 | 1 | 1 | 2.5 | 64302245 | 155057567 | tier2 | Out-of-frame | 13550 | NA | 0.38129 |
| LIHC | TCGA-DD-AADC-01A | TCGA-DD-AADC | PRKCA|RPS6KB1 | PRKCA | RPS6KB1 | 17 | 17 | 1 | 1 | 14 | 6 | 5 | 1.1 | 64683385 | 57987923 | tier1 | Out-of-frame | 13551 | NA | 0.38901 |
| LIHC | TCGA-BC-A217-01A | TCGA-BC-A217 | PSEN1|ACSM1 | PSEN1 | ACSM1 | 14 | 16 | 1 | -1 | 5 | 2 | 2 | 0.025 | 73603291 | 20709110 | tier1 | NA | 13698 | non-validated | 0.38192 |
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