Transcript Fusion
The transcript fusion data of TCGA were retrieved from the TumorFusions database.
List of the transcript fusions of the GESPs in each cancer type
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| Cancer Type | TCGA_barcode | Patient | Fusion_transcript | Gene_A | Gene_B | Chr_A | Chr_B | Strand_A | Strand_B | #_Discordant_Pairs | #_JSR | #_perfect_JSR | Evalue | Junction_A | Junction_B | Tier | Frame | TN | WGS_validation | Centrality |
| LIHC | TCGA-BC-A10T-01A | TCGA-BC-A10T | LRP6|AC007621.1 | LRP6 | AC007621.1 | 12 | 12 | -1 | -1 | 2 | 1 | 1 | 0.55 | 12333977 | 12509739 | tier2 | NA | 9542 | NA | 0.3665 |
| LIHC | TCGA-BC-A216-01A | TCGA-BC-A216 | LRP6|MANSC1 | LRP6 | MANSC1 | 12 | 12 | -1 | -1 | 21 | 22 | 19 | 0.94 | 12397196 | 12483892 | tier1 | Out-of-frame | 9546 | validated | 0.36738 |
| LIHC | TCGA-DD-A11C-01A | TCGA-DD-A11C | MACF1|ALB | MACF1 | ALB | 1 | 4 | 1 | 1 | 2 | 1 | 1 | 1.9 | 39916883 | 74270034 | tier2 | CDS-5UTR | 9725 | NA | 0.37212 |
| LIHC | TCGA-BC-A69H-01A | TCGA-BC-A69H | MAP4|GTF2H5 | MAP4 | GTF2H5 | 3 | 6 | -1 | 1 | 50 | 20 | 20 | 0.67 | 48130263 | 158591502 | tier1 | 5UTR-5UTR | 9886 | NA | 0.36588 |
| LIHC | TCGA-EP-A2KA-01A | TCGA-EP-A2KA | MAP4|QRICH1 | MAP4 | QRICH1 | 3 | 3 | -1 | -1 | 41 | 33 | 28 | 1.1 | 47956307 | 49068077 | tier1 | Out-of-frame | 9893 | non-validated | 0.36722 |
| LIHC | TCGA-G3-A25S-01A | TCGA-G3-A25S | MARCH6|BASP1 | MARCH6 | BASP1 | 5 | 5 | 1 | 1 | 9 | 1 | 1 | 0.3 | 10354029 | 17275317 | tier3 | CDS-5UTR | 9984 | non-validated | 0 |
| LIHC | TCGA-BC-A217-01A | TCGA-BC-A217 | MAST2|TM4SF1 | MAST2 | TM4SF1 | 1 | 3 | 1 | -1 | 3 | 4 | 3 | 0.64 | 46295253 | 149093556 | tier1 | In-frame | 10027 | non-validated | 0.38211 |
| LIHC | TCGA-ED-A97K-01A | TCGA-ED-A97K | MFN1|HEG1 | MFN1 | HEG1 | 3 | 3 | 1 | -1 | 2 | 1 | 1 | 1.7 | 179069823 | 124748332 | tier3 | Out-of-frame | 10287 | NA | 0.35153 |
| LIHC | TCGA-ED-A7XO-01A | TCGA-ED-A7XO | MPP5|FAM71D | MPP5 | FAM71D | 14 | 14 | 1 | 1 | 3 | 1 | 1 | 0.11 | 67708250 | 67669811 | tier2 | NA | 10609 | NA | 0.3649 |
| LIHC | TCGA-DD-A118-01A | TCGA-DD-A118 | MTMR3|ZNRF3 | MTMR3 | ZNRF3 | 22 | 22 | 1 | 1 | 2 | 1 | 1 | 0.18 | 30279348 | 29383064 | tier3 | 5UTR-CDS | 10829 | NA | 0.34653 |
| LIHC | TCGA-BC-A10R-01A | TCGA-BC-A10R | MYH9|TXN2 | MYH9 | TXN2 | 22 | 22 | -1 | -1 | 61 | 72 | 67 | 0.003 | 36783852 | 36863964 | tier1 | 5UTR-CDS | 10918 | NA | 0.37799 |
| LIHC | TCGA-FV-A496-01A | TCGA-FV-A496 | MYLK|PLXND1 | MYLK | PLXND1 | 3 | 3 | -1 | -1 | 11 | 5 | 5 | 0.73 | 123345665 | 129297276 | tier1 | In-frame | 10934 | validated | 0.39216 |
| LIHC | TCGA-2Y-A9H2-01A | TCGA-2Y-A9H2 | NADSYN1|PAK1 | NADSYN1 | PAK1 | 11 | 11 | 1 | -1 | 5 | 5 | 4 | 0.37 | 71169590 | 77103586 | tier1 | CDS-5UTR | 11071 | NA | 0.37405 |
| LIHC | TCGA-EP-A2KA-01A | TCGA-EP-A2KA | NFAT5|SLC7A6 | NFAT5 | SLC7A6 | 16 | 16 | 1 | 1 | 2 | 1 | 1 | 0.075 | 69602451 | 68321649 | tier2 | 5UTR-CDS | 11444 | validated | 0.36195 |
| LIHC | TCGA-RC-A6M6-01A | TCGA-RC-A6M6 | NRCAM|CFTR | NRCAM | CFTR | 7 | 7 | -1 | 1 | 25 | 15 | 12 | 0.42 | 108096687 | 117305513 | tier1 | 5UTR-CDS | 11736 | NA | 0.37581 |
| LIHC | TCGA-CC-A3M9-01A | TCGA-CC-A3M9 | NRXN3|ADCK1 | NRXN3 | ADCK1 | 14 | 14 | 1 | 1 | 6 | 6 | 6 | 0.11 | 78710145 | 78397861 | tier1 | Out-of-frame | 11766 | NA | 0.36707 |
| LIHC | TCGA-2Y-A9H0-01A | TCGA-2Y-A9H0 | NSD1|FGFR4 | NSD1 | FGFR4 | 5 | 5 | 1 | 1 | 3 | 7 | 7 | 0.47 | 176563031 | 176519322 | tier1 | Out-of-frame | 11778 | NA | 0.3867 |
| LIHC | TCGA-CC-A8HV-01A | TCGA-CC-A8HV | NT5E|ASCC3 | NT5E | ASCC3 | 6 | 6 | 1 | -1 | 2 | 2 | 2 | 0.3 | 86160196 | 101054964 | tier4 | In-frame | 11823 | NA | 0.35817 |
| LIHC | TCGA-2Y-A9H2-01A | TCGA-2Y-A9H2 | NUMA1|CADM2 | NUMA1 | CADM2 | 11 | 3 | -1 | 1 | 20 | 14 | 13 | 0.29 | 71791504 | 86114755 | tier1 | 5UTR-CDS | 11881 | NA | 0.3581 |
| LIHC | TCGA-CC-5263-01A | TCGA-CC-5263 | OCLN|GPR98 | OCLN | GPR98 | 5 | 5 | 1 | 1 | 470 | 29 | 29 | 1.3 | 68788486 | 90261232 | tier1 | 5UTR-CDS | 12002 | NA | 0.37172 |
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