Transcript Fusion
The transcript fusion data of TCGA were retrieved from the TumorFusions database.
List of the transcript fusions of the GESPs in each cancer type
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| Cancer Type | TCGA_barcode | Patient | Fusion_transcript | Gene_A | Gene_B | Chr_A | Chr_B | Strand_A | Strand_B | #_Discordant_Pairs | #_JSR | #_perfect_JSR | Evalue | Junction_A | Junction_B | Tier | Frame | TN | WGS_validation | Centrality |
| LIHC | TCGA-CC-A3M9-01A | TCGA-CC-A3M9 | GPC6|GPC5 | GPC6 | GPC5 | 13 | 13 | 1 | 1 | 30 | 16 | 16 | 3.3 | 93879869 | 93518535 | tier1 | In-frame | 7329 | NA | 0.34681 |
| LIHC | TCGA-MI-A75E-01A | TCGA-MI-A75E | GPC6|GPC5 | GPC6 | GPC5 | 13 | 13 | 1 | 1 | 20 | 5 | 5 | 3.3 | 93879869 | 93518535 | tier1 | In-frame | 7332 | NA | 0.34681 |
| LIHC | TCGA-ED-A82E-01A | TCGA-ED-A82E | GPR110|TNFRSF21 | GPR110 | TNFRSF21 | 6 | 6 | -1 | -1 | 10 | 6 | 6 | 2.4 | 46976681 | 47221257 | tier1 | Out-of-frame | 7354 | NA | 0.35842 |
| LIHC | TCGA-CC-5263-01A | TCGA-CC-5263 | GPR126|VTA1 | GPR126 | VTA1 | 6 | 6 | 1 | 1 | 14 | 11 | 11 | 0.068 | 142623468 | 142487365 | tier1 | 5UTR-CDS | 7359 | NA | 0.38285 |
| LIHC | TCGA-DD-AAW3-01A | TCGA-DD-AAW3 | GPR126|VTA1 | GPR126 | VTA1 | 6 | 6 | 1 | 1 | 5 | 5 | 4 | 0.068 | 142731056 | 142510563 | tier2 | Out-of-frame | 7360 | NA | 0.38285 |
| LIHC | TCGA-ZP-A9CZ-01A | TCGA-ZP-A9CZ | GTF2F2|GPC5 | GTF2F2 | GPC5 | 13 | 13 | 1 | 1 | 26 | 20 | 20 | 0.51 | 45694856 | 92797083 | tier1 | In-frame | 7526 | NA | 0.36728 |
| LIHC | TCGA-EP-A2KA-01A | TCGA-EP-A2KA | GTPBP1|CDC42EP1 | GTPBP1 | CDC42EP1 | 22 | 22 | 1 | 1 | 6 | 5 | 5 | 0.033 | 39102152 | 37962079 | tier1 | CDS-5UTR | 7547 | non-validated | 0.37064 |
| LIHC | TCGA-DD-AAW2-01A | TCGA-DD-AAW2 | HINT2|NPR2 | HINT2 | NPR2 | 9 | 9 | -1 | 1 | 3 | 4 | 3 | 0.081 | 35814896 | 35805508 | tier4 | In-frame | 7767 | NA | 0.35614 |
| LIHC | TCGA-RC-A6M3-01A | TCGA-RC-A6M3 | HMG20A|SCAMP5 | HMG20A | SCAMP5 | 15 | 15 | 1 | 1 | 3 | 3 | 3 | 0.012 | 77713346 | 75304133 | tier1 | 5UTR-5UTR | 7853 | NA | 0.36403 |
| LIHC | TCGA-DD-AAEG-01A | TCGA-DD-AAEG | HS2ST1|SH3GLB1 | HS2ST1 | SH3GLB1 | 1 | 1 | 1 | 1 | 3 | 3 | 3 | 0.42 | 87380843 | 87185190 | tier4 | In-frame | 7963 | NA | 0.36686 |
| LIHC | TCGA-NI-A4U2-01A | TCGA-NI-A4U2 | IL13RA1|DOCK11 | IL13RA1 | DOCK11 | X | X | 1 | 1 | 34 | 30 | 27 | 0.96 | 117900939 | 117796649 | tier1 | In-frame | 8160 | NA | 0.36927 |
| LIHC | TCGA-PD-A5DF-01A | TCGA-PD-A5DF | IL1R1|IL1R2 | IL1R1 | IL1R2 | 2 | 2 | 1 | 1 | 2 | 3 | 2 | 1 | 102770477 | 102632333 | tier4 | 5UTR-CDS | 8168 | non-validated | 0.36387 |
| LIHC | TCGA-BC-A217-01A | TCGA-BC-A217 | ITGA5|GTSF1 | ITGA5 | GTSF1 | 12 | 12 | -1 | -1 | 235 | 188 | 165 | 0.89 | 54801433 | 54857081 | tier1 | In-frame | 8382 | validated | 0.36781 |
| LIHC | TCGA-UB-A7MA-01A | TCGA-UB-A7MA | ITGAV|IFT172 | ITGAV | IFT172 | 2 | 2 | 1 | -1 | 2 | 4 | 3 | 4.7 | 187466878 | 27708370 | tier3 | Out-of-frame | 8392 | NA | 0.37637 |
| LIHC | TCGA-CC-A7IJ-01A | TCGA-CC-A7IJ | KCNMA1|DOCK1 | KCNMA1 | DOCK1 | 10 | 10 | -1 | 1 | 7 | 4 | 3 | 0.14 | 78880731 | 129249596 | tier1 | Out-of-frame | 8584 | NA | 0.3785 |
| LIHC | TCGA-BW-A5NO-01A | TCGA-BW-A5NO | KIAA0319L|CIB2 | KIAA0319L | CIB2 | 1 | 15 | -1 | -1 | 39 | 38 | 34 | 0.022 | 36022808 | 78403618 | tier1 | 5UTR-CDS | 8773 | validated | 0.36189 |
| LIHC | TCGA-DD-A4NO-01A | TCGA-DD-A4NO | KLHL5|HLA-F | KLHL5 | HLA-F | 4 | 6 | 1 | 1 | 32 | 17 | 17 | 0.18 | 39128477 | 29705899 | tier1 | NA | 9072 | NA | 0.36103 |
| LIHC | TCGA-DD-AACL-01A | TCGA-DD-AACL | LMBR1|PRSS1 | LMBR1 | PRSS1 | 7 | 7 | -1 | 1 | 2 | 6 | 6 | 1.7 | 156589083 | 142460719 | tier2 | In-frame | 9384 | NA | 0.35782 |
| LIHC | TCGA-DD-A11C-01A | TCGA-DD-A11C | LMBRD2|NADKD1 | LMBRD2 | NADKD1 | 5 | 5 | -1 | -1 | 13 | 7 | 7 | 0.3 | 36151658 | 36207367 | tier1 | 5UTR-CDS | 9399 | NA | 0.33491 |
| LIHC | TCGA-BC-A8YO-01A | TCGA-BC-A8YO | LPP|CLPTM1L | LPP | CLPTM1L | 3 | 5 | 1 | -1 | 2 | 4 | 4 | 0.47 | 188478070 | 1338097 | tier2 | Out-of-frame | 9457 | NA | 0.36918 |
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