Transcript Fusion
The transcript fusion data of TCGA were retrieved from the TumorFusions database.
List of the transcript fusions of the GESPs in each cancer type
| Showing page 143 |
first page | previous page | next page | last page |
| Cancer Type | TCGA_barcode | Patient | Fusion_transcript | Gene_A | Gene_B | Chr_A | Chr_B | Strand_A | Strand_B | #_Discordant_Pairs | #_JSR | #_perfect_JSR | Evalue | Junction_A | Junction_B | Tier | Frame | TN | WGS_validation | Centrality |
| LIHC | TCGA-ED-A82E-01A | TCGA-ED-A82E | EDA|FAAH2 | EDA | FAAH2 | X | X | 1 | 1 | 23 | 24 | 23 | 0.37 | 68836548 | 57318931 | tier1 | In-frame | 5266 | NA | 0.35655 |
| LIHC | TCGA-ZS-A9CF-01A | TCGA-ZS-A9CF | EFNA1|ADAM15 | EFNA1 | ADAM15 | 1 | 1 | 1 | 1 | 14 | 11 | 11 | 0.7 | 155104110 | 155034936 | tier1 | Out-of-frame | 5351 | NA | 0.37659 |
| LIHC | TCGA-2Y-A9H0-01A | TCGA-2Y-A9H0 | EGFR|LYST | EGFR | LYST | 7 | 1 | 1 | -1 | 13 | 6 | 6 | 0.11 | 55087058 | 235996967 | tier1 | CDS-5UTR | 5376 | NA | 0.39146 |
| LIHC | TCGA-RC-A6M5-01A | TCGA-RC-A6M5 | ENPP1|CDX1 | ENPP1 | CDX1 | 6 | 5 | 1 | 1 | 78 | 75 | 65 | 0.21 | 132181646 | 149562331 | tier1 | Out-of-frame | 5596 | NA | 0.36442 |
| LIHC | TCGA-ED-A7PX-01A | TCGA-ED-A7PX | EPB41|ATPIF1 | EPB41 | ATPIF1 | 1 | 1 | 1 | 1 | 24 | 26 | 23 | 0.39 | 29391670 | 28573100 | tier1 | Out-of-frame | 5628 | NA | 0.37506 |
| LIHC | TCGA-MR-A520-01A | TCGA-MR-A520 | EPB41|USP49 | EPB41 | USP49 | 1 | 6 | 1 | -1 | 2 | 1 | 1 | 0.97 | 29220349 | 41774749 | tier3 | 5UTR-5UTR | 5632 | non-validated | 0.38136 |
| LIHC | TCGA-DD-AA3A-01A | TCGA-DD-AA3A | EPHA6|TSC22D2 | EPHA6 | TSC22D2 | 3 | 3 | 1 | 1 | 15 | 9 | 8 | 0.68 | 96585733 | 150174863 | tier1 | Out-of-frame | 5675 | NA | 0.36646 |
| LIHC | TCGA-KR-A7K2-01A | TCGA-KR-A7K2 | ERBB2|PPP1R1B | ERBB2 | PPP1R1B | 17 | 17 | 1 | 1 | 13 | 12 | 11 | 3.8 | 37883800 | 37791860 | tier1 | In-frame | 5724 | NA | 0.38487 |
| LIHC | TCGA-2Y-A9GZ-01A | TCGA-2Y-A9GZ | ESRRA|KCNK4 | ESRRA | KCNK4 | 11 | 11 | 1 | 1 | 70 | 58 | 53 | 0.22 | 64074976 | 64064350 | tier1 | Out-of-frame | 5836 | NA | 0.37362 |
| LIHC | TCGA-G3-AAUZ-01A | TCGA-G3-AAUZ | FBXO46|SYMPK | FBXO46 | SYMPK | 19 | 19 | -1 | -1 | 5 | 31 | 29 | 0.13 | 46234107 | 46321404 | tier1 | 5UTR-CDS | 6363 | NA | 0.36624 |
| LIHC | TCGA-ED-A82E-01A | TCGA-ED-A82E | FGD4|CD4 | FGD4 | CD4 | 12 | 12 | 1 | 1 | 7 | 12 | 11 | 0.91 | 32764217 | 6925222 | tier1 | Out-of-frame | 6432 | NA | 0.38196 |
| LIHC | TCGA-ED-A7PX-01A | TCGA-ED-A7PX | FGFR2|BICC1 | FGFR2 | BICC1 | 10 | 10 | -1 | 1 | 76 | 73 | 66 | 0.91 | 123243212 | 60461834 | tier1 | In-frame | 6461 | NA | 0.38308 |
| LIHC | TCGA-DD-A1EK-01A | TCGA-DD-A1EK | FGFR3|TACC3 | FGFR3 | TACC3 | 4 | 4 | 1 | 1 | 1527 | 1727 | 1605 | 0.12 | 1801539 | 1746245 | tier1 | Out-of-frame | 6498 | NA | 0.38077 |
| LIHC | TCGA-DD-A1EB-01A | TCGA-DD-A1EB | GABBR2|ANKS6 | GABBR2 | ANKS6 | 9 | 9 | -1 | -1 | 8 | 2 | 1 | 0.42 | 101304155 | 101498905 | tier2 | In-frame | 6892 | validated | 0.36858 |
| LIHC | TCGA-CC-A7IL-01A | TCGA-CC-A7IL | GAPDH|APOA2 | GAPDH | APOA2 | 12 | 1 | 1 | -1 | 2 | 3 | 3 | 0.37 | 6647481 | 161193418 | tier3 | 3UTR-5UTR | 6949 | NA | 0.36473 |
| LIHC | TCGA-DD-AACJ-01A | TCGA-DD-AACJ | GAPDH|APOA2 | GAPDH | APOA2 | 12 | 1 | 1 | -1 | 2 | 2 | 2 | 0.37 | 6647481 | 161193418 | tier3 | 3UTR-5UTR | 6950 | NA | 0.36473 |
| LIHC | TCGA-DD-A3A8-01A | TCGA-DD-A3A8 | GC|DSP | GC | DSP | 4 | 6 | -1 | 1 | 2 | 89 | 2 | 2.4 | 72607413 | 7575528 | tier3 | 3UTR-CDS | 7007 | non-validated | 0.36626 |
| LIHC | TCGA-UB-A7MB-01A | TCGA-UB-A7MB | GLIS3|GOLM1 | GLIS3 | GOLM1 | 9 | 9 | -1 | -1 | 6 | 5 | 5 | 0.72 | 4286038 | 88661487 | tier1 | In-frame | 7111 | NA | 0.36368 |
| LIHC | TCGA-CC-A5UD-01A | TCGA-CC-A5UD | GNAS|BIRC6 | GNAS | BIRC6 | 20 | 2 | 1 | 1 | 2 | 58 | 29 | 2.1 | 57486247 | 32820101 | tier3 | 3UTR-CDS | 7182 | NA | 0.3819 |
| LIHC | TCGA-BC-A8YO-01A | TCGA-BC-A8YO | GOSR1|CPD | GOSR1 | CPD | 17 | 17 | 1 | 1 | 72 | 49 | 47 | 0.04 | 28811788 | 28788895 | tier1 | In-frame | 7303 | NA | 0.3539 |
|
Showing page 143 |
first page | previous page | next page | last page |
Copyright © 2020 University of Pennsylvania. All Rights Reserved.