Transcript Fusion
The transcript fusion data of TCGA were retrieved from the TumorFusions database.
List of the transcript fusions of the GESPs in each cancer type
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| Cancer Type | TCGA_barcode | Patient | Fusion_transcript | Gene_A | Gene_B | Chr_A | Chr_B | Strand_A | Strand_B | #_Discordant_Pairs | #_JSR | #_perfect_JSR | Evalue | Junction_A | Junction_B | Tier | Frame | TN | WGS_validation | Centrality |
| LIHC | TCGA-DD-A39V-01A | TCGA-DD-A39V | CLIC4|CCDC28B | CLIC4 | CCDC28B | 1 | 1 | 1 | 1 | 174 | 116 | 110 | 2.7 | 25072116 | 32667514 | tier1 | CDS-5UTR | 3789 | NA | 0.36249 |
| LIHC | TCGA-ZP-A9CZ-01A | TCGA-ZP-A9CZ | CLSTN3|C1S | CLSTN3 | C1S | 12 | 12 | 1 | 1 | 89 | 67 | 65 | 0.13 | 7288987 | 7169056 | tier1 | CDS-5UTR | 3855 | NA | 0.3661 |
| LIHC | TCGA-DD-AADA-01A | TCGA-DD-AADA | CLSTN3|LRRC23 | CLSTN3 | LRRC23 | 12 | 12 | 1 | 1 | 334 | 357 | 331 | 3 | 7295907 | 7023055 | tier1 | CDS-3UTR | 3856 | NA | 0.35298 |
| LIHC | TCGA-DD-A73B-01A | TCGA-DD-A73B | CLU|EPB41L1 | CLU | EPB41L1 | 8 | 20 | -1 | 1 | 2 | 2 | 2 | 0.92 | 27455514 | 34818077 | tier4 | 3UTR-3UTR | 3871 | NA | 0.37209 |
| LIHC | TCGA-BC-A3KG-01A | TCGA-BC-A3KG | COBLL1|SLC38A11 | COBLL1 | SLC38A11 | 2 | 2 | -1 | -1 | 27 | 26 | 22 | 0.1 | 165697666 | 165772483 | tier1 | In-frame | 3964 | NA | 0.3389 |
| LIHC | TCGA-CC-A3M9-01A | TCGA-CC-A3M9 | COG6|GPC5 | COG6 | GPC5 | 13 | 13 | 1 | 1 | 2 | 3 | 3 | 0.15 | 40301685 | 93518535 | tier3 | Out-of-frame | 3981 | NA | 0.34909 |
| LIHC | TCGA-DD-A115-01A | TCGA-DD-A115 | CPM|GOLT1B | CPM | GOLT1B | 12 | 12 | -1 | 1 | 31 | 13 | 13 | 0.71 | 69326458 | 21659819 | tier1 | In-frame | 4129 | NA | 0.34374 |
| LIHC | TCGA-BC-A10Y-01A | TCGA-BC-A10Y | CPSF1|AHNAK | CPSF1 | AHNAK | 8 | 11 | -1 | -1 | 70 | 25 | 25 | 0.002 | 145620650 | 62201363 | tier1 | Out-of-frame | 4143 | NA | 0.36751 |
| LIHC | TCGA-DD-A115-01A | TCGA-DD-A115 | CPT1A|ANPEP | CPT1A | ANPEP | 11 | 15 | -1 | -1 | 46 | 53 | 53 | 0.2 | 68609243 | 90328732 | tier1 | 5UTR-CDS | 4167 | NA | 0.35652 |
| LIHC | TCGA-RC-A6M4-01A | TCGA-RC-A6M4 | CYP4F12|PTGER1 | CYP4F12 | PTGER1 | 19 | 19 | 1 | -1 | 97 | 91 | 76 | 0.008 | 15789215 | 14585149 | tier1 | CDS-5UTR | 4505 | NA | 0.35246 |
| LIHC | TCGA-2Y-A9H0-01A | TCGA-2Y-A9H0 | DAG1|LARS2 | DAG1 | LARS2 | 3 | 3 | 1 | 1 | 68 | 38 | 36 | 0.99 | 49548252 | 45588843 | tier1 | In-frame | 4537 | NA | 0.36673 |
| LIHC | TCGA-DD-A1EJ-01A | TCGA-DD-A1EJ | DCHS2|C22orf45 | DCHS2 | C22orf45 | 4 | 22 | -1 | -1 | 2 | 1 | 1 | 0.019 | 155410456 | 24838108 | tier3 | CDS-5UTR | 4597 | non-validated | 0 |
| LIHC | TCGA-ZS-A9CF-01A | TCGA-ZS-A9CF | DDX23|RND1 | DDX23 | RND1 | 12 | 12 | -1 | -1 | 2 | 7 | 7 | 2.1 | 49245867 | 49255901 | tier3 | 5UTR-CDS | 4657 | NA | 0.36297 |
| LIHC | TCGA-XR-A8TG-01A | TCGA-XR-A8TG | DIAPH2|NRP2 | DIAPH2 | NRP2 | X | 2 | 1 | 1 | 16 | 24 | 22 | 0.64 | 95940189 | 206656959 | tier1 | Out-of-frame | 4820 | NA | 0.36993 |
| LIHC | TCGA-KR-A7K8-01A | TCGA-KR-A7K8 | DNM2|ANGPTL4 | DNM2 | ANGPTL4 | 19 | 19 | 1 | 1 | 18 | 23 | 22 | 0.11 | 10829079 | 8438589 | tier1 | Out-of-frame | 4967 | NA | 0.37964 |
| LIHC | TCGA-ZS-A9CF-01A | TCGA-ZS-A9CF | DNM2|RELB | DNM2 | RELB | 19 | 19 | 1 | 1 | 39 | 35 | 34 | 0.13 | 10829079 | 45537502 | tier1 | Out-of-frame | 4983 | NA | 0.3833 |
| LIHC | TCGA-GJ-A6C0-01A | TCGA-GJ-A6C0 | DNM2|SLC44A2 | DNM2 | SLC44A2 | 19 | 19 | 1 | 1 | 6 | 3 | 3 | 0.057 | 10930765 | 10736929 | tier1 | Out-of-frame | 4989 | NA | 0.37726 |
| LIHC | TCGA-DD-A3A5-01A | TCGA-DD-A3A5 | DPP4|THSD7B | DPP4 | THSD7B | 2 | 2 | -1 | 1 | 3 | 7 | 6 | 0.24 | 162929909 | 137813990 | tier1 | In-frame | 5083 | NA | 0.35843 |
| LIHC | TCGA-FV-A3I0-01A | TCGA-FV-A3I0 | DTNA|AQP4 | DTNA | AQP4 | 18 | 18 | 1 | -1 | 13 | 7 | 7 | 1.2 | 32073478 | 24442560 | tier1 | 5UTR-CDS | 5154 | non-validated | 0.37293 |
| LIHC | TCGA-KR-A7K8-01A | TCGA-KR-A7K8 | DUSP10|SUSD4 | DUSP10 | SUSD4 | 1 | 1 | -1 | -1 | 8 | 18 | 15 | 0.008 | 221912276 | 223442017 | tier1 | In-frame | 5176 | NA | 0.37377 |
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