Transcript Fusion
The transcript fusion data of TCGA were retrieved from the TumorFusions database.
List of the transcript fusions of the GESPs in each cancer type
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| Cancer Type | TCGA_barcode | Patient | Fusion_transcript | Gene_A | Gene_B | Chr_A | Chr_B | Strand_A | Strand_B | #_Discordant_Pairs | #_JSR | #_perfect_JSR | Evalue | Junction_A | Junction_B | Tier | Frame | TN | WGS_validation | Centrality |
| LIHC | TCGA-KR-A7K8-01A | TCGA-KR-A7K8 | ASPH|EIF4EBP1 | ASPH | EIF4EBP1 | 8 | 8 | -1 | 1 | 10 | 13 | 12 | 2.3 | 62430087 | 37914599 | tier1 | Out-of-frame | 1540 | NA | 0.3668 |
| LIHC | TCGA-DD-AAD1-01A | TCGA-DD-AAD1 | ATP11C|CXorf66 | ATP11C | CXorf66 | X | X | -1 | -1 | 7 | 4 | 4 | 3.8 | 139014175 | 139040376 | tier1 | Out-of-frame | 1685 | NA | 0 |
| LIHC | TCGA-DD-A4NA-01A | TCGA-DD-A4NA | ATP1B1|THSD4 | ATP1B1 | THSD4 | 1 | 15 | 1 | 1 | 2 | 1 | 1 | 0.07 | 169101960 | 72072881 | tier3 | 3UTR-CDS | 1700 | non-validated | 0.35863 |
| LIHC | TCGA-DD-A3A5-01A | TCGA-DD-A3A5 | B4GALT1|BAG1 | B4GALT1 | BAG1 | 9 | 9 | -1 | -1 | 36 | 17 | 17 | 0.17 | 33166756 | 33262828 | tier1 | In-frame | 1867 | NA | 0.37586 |
| LIHC | TCGA-BC-A8YO-01A | TCGA-BC-A8YO | B4GALT5|TBL3 | B4GALT5 | TBL3 | 20 | 16 | -1 | 1 | 5 | 3 | 3 | 0.13 | 48330113 | 2024057 | tier1 | Out-of-frame | 1880 | NA | 0.36302 |
| LIHC | TCGA-FV-A4ZQ-01A | TCGA-FV-A4ZQ | BBX|ALCAM | BBX | ALCAM | 3 | 3 | 1 | 1 | 3 | 1 | 1 | 0.12 | 107497366 | 105238911 | tier2 | In-frame | 1955 | validated | 0.36176 |
| LIHC | TCGA-XR-A8TG-01A | TCGA-XR-A8TG | BCAM|IGSF23 | BCAM | IGSF23 | 19 | 19 | 1 | 1 | 3 | 5 | 5 | 0.3 | 45318017 | 45130717 | tier1 | In-frame | 1962 | NA | 0.34882 |
| LIHC | TCGA-ZS-A9CF-02A | TCGA-ZS-A9CF | BCAR3|ABCA4 | BCAR3 | ABCA4 | 1 | 1 | -1 | -1 | 13 | 3 | 3 | 0.84 | 94079404 | 94505683 | tier1 | In-frame | 1969 | NA | 0.37508 |
| LIHC | TCGA-FV-A495-01A | TCGA-FV-A495 | C16orf45|SMPDL3B | C16orf45 | SMPDL3B | 16 | 1 | 1 | 1 | 8 | 4 | 4 | 0.044 | 15528616 | 28284987 | tier1 | Out-of-frame | 2480 | validated | 0 |
| LIHC | TCGA-CC-5260-01A | TCGA-CC-5260 | C19orf2|RYR1 | C19orf2 | RYR1 | 19 | 19 | 1 | 1 | 55 | 33 | 31 | 1.4 | 30433571 | 39038873 | tier1 | Out-of-frame | 2560 | non-validated | 0 |
| LIHC | TCGA-G3-AAUZ-01A | TCGA-G3-AAUZ | C1S|NXPH4 | C1S | NXPH4 | 12 | 12 | 1 | 1 | 31 | 34 | 30 | 0.016 | 7168181 | 57618661 | tier1 | 5UTR-CDS | 2631 | NA | 0.3629 |
| LIHC | TCGA-DD-A115-01A | TCGA-DD-A115 | CALD1|CGN | CALD1 | CGN | 7 | 1 | 1 | 1 | 28 | 12 | 12 | 0.24 | 134576424 | 151490982 | tier2 | CDS-5UTR | 2902 | NA | 0.37014 |
| LIHC | TCGA-2Y-A9H0-01A | TCGA-2Y-A9H0 | CAMK2G|C10orf55 | CAMK2G | C10orf55 | 10 | 10 | -1 | -1 | 9 | 10 | 9 | 1.2 | 75601927 | 75676399 | tier1 | CDS-5UTR | 2925 | NA | 0 |
| LIHC | TCGA-FV-A3R2-01A | TCGA-FV-A3R2 | CAPN5|EPB41L1 | CAPN5 | EPB41L1 | 11 | 20 | 1 | 1 | 2 | 4 | 1 | 0.031 | 76837196 | 34818077 | tier4 | 3UTR-3UTR | 2962 | non-validated | 0.36991 |
| LIHC | TCGA-DD-A73F-01A | TCGA-DD-A73F | CAPZA2|ABCB1 | CAPZA2 | ABCB1 | 7 | 7 | 1 | -1 | 6 | 5 | 5 | 0.009 | 116451156 | 87168661 | tier1 | NA | 2978 | NA | 0.35332 |
| LIHC | TCGA-DD-A73F-01A | TCGA-DD-A73F | CCDC73|CAV1 | CCDC73 | CAV1 | 11 | 7 | -1 | 1 | 3 | 2 | 2 | 1.5 | 32815895 | 116199000 | tier1 | 5UTR-CDS | 3178 | NA | 0.37676 |
| LIHC | TCGA-DD-A4NA-01A | TCGA-DD-A4NA | CD74|THSD4 | CD74 | THSD4 | 5 | 15 | -1 | 1 | 2 | 1 | 1 | 0.046 | 149781200 | 72072881 | tier3 | 3UTR-CDS | 3298 | non-validated | 0.36551 |
| LIHC | TCGA-G3-A7M5-01A | TCGA-G3-A7M5 | CDKAL1|CRHR2 | CDKAL1 | CRHR2 | 6 | 7 | 1 | -1 | 6 | 1 | 1 | 1 | 21108694 | 30695628 | tier3 | In-frame | 3448 | NA | 0.35348 |
| LIHC | TCGA-XR-A8TG-01A | TCGA-XR-A8TG | CERS6|GAD1 | CERS6 | GAD1 | 2 | 2 | 1 | 1 | 2 | 2 | 2 | 0.88 | 169487552 | 171715314 | tier2 | In-frame | 3577 | NA | 0.35487 |
| LIHC | TCGA-PD-A5DF-01A | TCGA-PD-A5DF | CLIC4|ARFGAP3 | CLIC4 | ARFGAP3 | 1 | 22 | 1 | -1 | 29 | 19 | 19 | 0.036 | 25072116 | 43243638 | tier1 | In-frame | 3787 | validated | 0.36332 |
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