Transcript Fusion
The transcript fusion data of TCGA were retrieved from the TumorFusions database.
List of the transcript fusions of the GESPs in each cancer type
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| Cancer Type | TCGA_barcode | Patient | Fusion_transcript | Gene_A | Gene_B | Chr_A | Chr_B | Strand_A | Strand_B | #_Discordant_Pairs | #_JSR | #_perfect_JSR | Evalue | Junction_A | Junction_B | Tier | Frame | TN | WGS_validation | Centrality |
| LGG | TCGA-CS-4943-01A | TCGA-CS-4943 | ZNF577|GRIK5 | ZNF577 | GRIK5 | 19 | 19 | -1 | -1 | 8 | 6 | 6 | 1.4 | 52380535 | 42526506 | tier1 | Out-of-frame | 20562 | NA | 0 |
| LGG | TCGA-E1-A7YE-01A | TCGA-E1-A7YE | ZNF618|SLC31A1 | ZNF618 | SLC31A1 | 9 | 9 | 1 | 1 | 9 | 11 | 10 | 0.036 | 116638693 | 116018394 | tier1 | CDS-5UTR | 20595 | NA | 0 |
| LGG | TCGA-HT-A74H-01A | TCGA-HT-A74H | ZNRF3|CRYBB2 | ZNRF3 | CRYBB2 | 22 | 22 | 1 | 1 | 34 | 19 | 18 | 0.75 | 29280054 | 25617371 | tier1 | CDS-5UTR | 20701 | NA | 0 |
| LIHC | TCGA-DD-A3A5-01A | TCGA-DD-A3A5 | AAK1|RPIA | AAK1 | RPIA | 2 | 2 | -1 | 1 | 6 | 1 | 1 | 0.007 | 69783992 | 89028796 | tier2 | In-frame | 12 | NA | 0.36301 |
| LIHC | TCGA-BC-A10T-01A | TCGA-BC-A10T | ABCB4|TMEM169 | ABCB4 | TMEM169 | 7 | 2 | -1 | 1 | 25 | 19 | 17 | 0.5 | 87076350 | 216946870 | tier1 | CDS-5UTR | 49 | NA | 0.34976 |
| LIHC | TCGA-BC-A10T-01A | TCGA-BC-A10T | ABCC2|C3orf78 | ABCC2 | C3orf78 | 10 | 3 | 1 | 1 | 158 | 171 | 166 | 1.2 | 101567986 | 52574440 | tier1 | Out-of-frame | 57 | NA | 0 |
| LIHC | TCGA-DD-AAEA-01A | TCGA-DD-AAEA | ABCC2|CTNNA3 | ABCC2 | CTNNA3 | 10 | 10 | 1 | -1 | 243 | 303 | 294 | 0.05 | 101544538 | 67680375 | tier1 | In-frame | 58 | NA | 0.36402 |
| LIHC | TCGA-DD-A11A-01A | TCGA-DD-A11A | AC002094.1|MYH9 | AC002094.1 | MYH9 | 17 | 22 | -1 | -1 | 3 | 2 | 2 | 0.15 | 26696703 | 36685232 | tier1 | NA | 135 | NA | 0.37609 |
| LIHC | TCGA-BC-A10Y-01A | TCGA-BC-A10Y | AC002094.1|UTRN | AC002094.1 | UTRN | 17 | 6 | -1 | 1 | 4 | 2 | 2 | 0.25 | 26694297 | 144665237 | tier1 | NA | 138 | NA | 0.36716 |
| LIHC | TCGA-EP-A2KA-01A | TCGA-EP-A2KA | ACAP2|DLG1 | ACAP2 | DLG1 | 3 | 3 | -1 | -1 | 3 | 4 | 3 | 1.3 | 195112819 | 196778539 | tier1 | Out-of-frame | 248 | validated | 0.3823 |
| LIHC | TCGA-ED-A7PX-01A | TCGA-ED-A7PX | ACTN4|RYR1 | ACTN4 | RYR1 | 19 | 19 | 1 | 1 | 6 | 10 | 10 | 0.22 | 39138547 | 39051753 | tier1 | In-frame | 382 | NA | 0.37895 |
| LIHC | TCGA-XR-A8TG-01A | TCGA-XR-A8TG | ACVR1B|CS | ACVR1B | CS | 12 | 12 | 1 | -1 | 14 | 3 | 3 | 1.7 | 52380726 | 56680429 | tier1 | Out-of-frame | 394 | NA | 0.38209 |
| LIHC | TCGA-DD-A115-01A | TCGA-DD-A115 | ADAM15|DCST1 | ADAM15 | DCST1 | 1 | 1 | 1 | 1 | 40 | 21 | 18 | 0.02 | 155025253 | 155006448 | tier1 | CDS-5UTR | 409 | NA | 0.37305 |
| LIHC | TCGA-ED-A4XI-01A | TCGA-ED-A4XI | ADCY9|PHF16 | ADCY9 | PHF16 | 16 | X | -1 | 1 | 3 | 4 | 3 | 0.11 | 4163751 | 46844285 | tier1 | CDS-5UTR | 479 | non-validated | 0.34925 |
| LIHC | TCGA-G3-A7M6-01A | TCGA-G3-A7M6 | ALB|TLN1 | ALB | TLN1 | 4 | 9 | 1 | -1 | 3 | 1 | 1 | 0.058 | 74286973 | 35720506 | tier3 | 3UTR-CDS | 791 | NA | 0.37955 |
| LIHC | TCGA-BC-4072-01B | TCGA-BC-4072 | ANXA4|PKN1 | ANXA4 | PKN1 | 2 | 19 | 1 | 1 | 1077 | 695 | 603 | 2.9 | 70008706 | 14578377 | tier1 | In-frame | 1047 | NA | 0.3846 |
| LIHC | TCGA-2Y-A9HB-01A | TCGA-2Y-A9HB | APOC1|SLC38A4 | APOC1 | SLC38A4 | 19 | 12 | 1 | -1 | 2 | 3 | 1 | 0.74 | 45422606 | 47226191 | tier3 | NA | 1137 | NA | 0.34582 |
| LIHC | TCGA-DD-AACJ-01A | TCGA-DD-AACJ | APOE|DSP | APOE | DSP | 19 | 6 | 1 | 1 | 2 | 1 | 1 | 0.13 | 45412650 | 7575528 | tier3 | 3UTR-CDS | 1143 | NA | 0.36909 |
| LIHC | TCGA-FV-A3I0-01A | TCGA-FV-A3I0 | ARID1A|THSD7B | ARID1A | THSD7B | 1 | 2 | 1 | 1 | 4 | 6 | 6 | 0.54 | 27059283 | 137639714 | tier1 | CDS-5UTR | 1346 | non-validated | 0.36631 |
| LIHC | TCGA-DD-A4NE-01A | TCGA-DD-A4NE | ASPH|DCLK1 | ASPH | DCLK1 | 8 | 13 | -1 | -1 | 5 | 4 | 2 | 0.009 | 62438536 | 36397012 | tier1 | Out-of-frame | 1539 | non-validated | 0.36203 |
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