Transcript Fusion
The transcript fusion data of TCGA were retrieved from the TumorFusions database.
List of the transcript fusions of the GESPs in each cancer type
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| Cancer Type | TCGA_barcode | Patient | Fusion_transcript | Gene_A | Gene_B | Chr_A | Chr_B | Strand_A | Strand_B | #_Discordant_Pairs | #_JSR | #_perfect_JSR | Evalue | Junction_A | Junction_B | Tier | Frame | TN | WGS_validation | Centrality |
| LGG | TCGA-TQ-A7RU-01A | TCGA-TQ-A7RU | TNR|RFWD2 | TNR | RFWD2 | 1 | 1 | -1 | -1 | 3 | 8 | 8 | 0.58 | 175497405 | 175958615 | tier1 | 5UTR-CDS | 18372 | NA | 0 |
| LGG | TCGA-WY-A859-01A | TCGA-WY-A859 | TNRC6B|TMEM184B | TNRC6B | TMEM184B | 22 | 22 | 1 | -1 | 38 | 11 | 11 | 0.19 | 40552186 | 38644025 | tier1 | CDS-5UTR | 18398 | NA | 0 |
| LGG | TCGA-TQ-A8XE-01A | TCGA-TQ-A8XE | TRAPPC2|ATP2B3 | TRAPPC2 | ATP2B3 | X | X | -1 | 1 | 14 | 42 | 39 | 0.2 | 13737990 | 152845436 | tier1 | Out-of-frame | 18572 | non-validated | 0 |
| LGG | TCGA-TM-A84H-01A | TCGA-TM-A84H | TRPC4AP|KCNB1 | TRPC4AP | KCNB1 | 20 | 20 | -1 | -1 | 5 | 4 | 4 | 0.84 | 33657099 | 47991529 | tier1 | In-frame | 18720 | NA | 0 |
| LGG | TCGA-P5-A5EU-01A | TCGA-P5-A5EU | TSHZ3|CEACAM7 | TSHZ3 | CEACAM7 | 19 | 19 | -1 | -1 | 6 | 8 | 8 | 0.13 | 31840086 | 42181431 | tier1 | In-frame | 18776 | NA | 0 |
| LGG | TCGA-DU-7013-01A | TCGA-DU-7013 | TSPAN3|PLAT | TSPAN3 | PLAT | 15 | 8 | -1 | -1 | 2 | 44 | 32 | 0.37 | 77338372 | 42051245 | tier3 | NA | 18797 | non-validated | 0 |
| LGG | TCGA-TM-A84I-01A | TCGA-TM-A84I | TSPAN5|EMCN | TSPAN5 | EMCN | 4 | 4 | -1 | -1 | 3 | 1 | 1 | 1.7 | 99579297 | 101344561 | tier3 | Out-of-frame | 18801 | NA | 0 |
| LGG | TCGA-TM-A84I-01A | TCGA-TM-A84I | TSPAN9|KRT7 | TSPAN9 | KRT7 | 12 | 12 | 1 | 1 | 20 | 16 | 15 | 0.27 | 3192885 | 52628939 | tier1 | 5UTR-CDS | 18812 | NA | 0 |
| LGG | TCGA-TM-A84I-01A | TCGA-TM-A84I | TSPAN9|KRT86 | TSPAN9 | KRT86 | 12 | 12 | 1 | 1 | 4 | 1 | 1 | 0.082 | 3192885 | 52699024 | tier2 | 5UTR-CDS | 18813 | NA | 0 |
| LGG | TCGA-DU-6407-02A | TCGA-DU-6407 | TULP3|C12orf57 | TULP3 | C12orf57 | 12 | 12 | 1 | 1 | 29 | 38 | 31 | 0.25 | 3018746 | 7054934 | tier1 | Out-of-frame | 18957 | non-validated | 0 |
| LGG | TCGA-FG-5963-02A | TCGA-FG-5963 | UBE2E2|SEMA3A | UBE2E2 | SEMA3A | 3 | 7 | 1 | -1 | 8 | 9 | 9 | 0.55 | 23258803 | 83643667 | tier1 | Out-of-frame | 19065 | NA | 0 |
| LGG | TCGA-E1-A7YU-01A | TCGA-E1-A7YU | UBP1|MAP4 | UBP1 | MAP4 | 3 | 3 | -1 | -1 | 4 | 4 | 3 | 0.38 | 33481228 | 48040369 | tier1 | CDS-5UTR | 19133 | NA | 0 |
| LGG | TCGA-CS-6665-01A | TCGA-CS-6665 | USP46|PDGFRA | USP46 | PDGFRA | 4 | 4 | -1 | 1 | 436 | 250 | 231 | 1.1 | 53525282 | 55140698 | tier1 | Out-of-frame | 19396 | validated | 0 |
| LGG | TCGA-DU-6399-01A | TCGA-DU-6399 | VPS41|SDK1 | VPS41 | SDK1 | 7 | 7 | -1 | 1 | 3 | 4 | 3 | 0.63 | 38835065 | 4150295 | tier1 | In-frame | 19652 | NA | 0 |
| LGG | TCGA-WY-A859-01A | TCGA-WY-A859 | WDR37|PCDH12 | WDR37 | PCDH12 | 10 | 5 | 1 | -1 | 10 | 7 | 6 | 0.088 | 1151207 | 141337810 | tier1 | NA | 19773 | NA | 0 |
| LGG | TCGA-E1-5307-01A | TCGA-E1-5307 | ZBTB20|LSAMP | ZBTB20 | LSAMP | 3 | 3 | -1 | -1 | 62 | 66 | 65 | 0.81 | 114619151 | 115571464 | tier1 | 5UTR-CDS | 20087 | NA | 0 |
| LGG | TCGA-TM-A7CF-01A | TCGA-TM-A7CF | ZNF292|GRM4 | ZNF292 | GRM4 | 6 | 6 | 1 | -1 | 3 | 4 | 4 | 0.12 | 87865477 | 34101636 | tier1 | CDS-5UTR | 20443 | non-validated | 0 |
| LGG | TCGA-HT-7690-01A | TCGA-HT-7690 | ZNF33A|PARD3 | ZNF33A | PARD3 | 10 | 10 | 1 | -1 | 2 | 3 | 2 | 0.38 | 38306314 | 34558827 | tier3 | Out-of-frame | 20466 | NA | 0 |
| LGG | TCGA-TM-A84B-01A | TCGA-TM-A84B | ZNF345|PTPRH | ZNF345 | PTPRH | 19 | 19 | 1 | -1 | 5 | 2 | 2 | 1.7 | 37342806 | 55699536 | tier1 | 5UTR-CDS | 20471 | NA | 0 |
| LGG | TCGA-E1-A7YL-01A | TCGA-E1-A7YL | ZNF460|SYT4 | ZNF460 | SYT4 | 19 | 18 | 1 | -1 | 7 | 6 | 6 | 0.046 | 57791492 | 40854359 | tier1 | 5UTR-CDS | 20513 | NA | 0 |
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