Transcript Fusion
The transcript fusion data of TCGA were retrieved from the TumorFusions database.
List of the transcript fusions of the GESPs in each cancer type
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| Cancer Type | TCGA_barcode | Patient | Fusion_transcript | Gene_A | Gene_B | Chr_A | Chr_B | Strand_A | Strand_B | #_Discordant_Pairs | #_JSR | #_perfect_JSR | Evalue | Junction_A | Junction_B | Tier | Frame | TN | WGS_validation | Centrality |
| LGG | TCGA-DU-6397-02A | TCGA-DU-6397 | SMEK2|IL18RAP | SMEK2 | IL18RAP | 2 | 2 | -1 | 1 | 4 | 3 | 3 | 0.15 | 55785911 | 103053672 | tier1 | In-frame | 16411 | non-validated | 0 |
| LGG | TCGA-FG-5963-01A | TCGA-FG-5963 | SMURF1|GJC3 | SMURF1 | GJC3 | 7 | 7 | -1 | -1 | 70 | 67 | 59 | 0.23 | 98741349 | 99521226 | tier1 | In-frame | 16445 | NA | 0 |
| LGG | TCGA-DU-5853-01A | TCGA-DU-5853 | SNX30|LPAR1 | SNX30 | LPAR1 | 9 | 9 | 1 | -1 | 3 | 2 | 2 | 0.99 | 115513437 | 113638002 | tier1 | Out-of-frame | 16559 | NA | 0 |
| LGG | TCGA-TM-A84J-01A | TCGA-TM-A84J | SORL1|LMNA | SORL1 | LMNA | 11 | 1 | 1 | 1 | 12 | 6 | 4 | 4.3 | 121367758 | 156104194 | tier1 | In-frame | 16601 | NA | 0 |
| LGG | TCGA-TM-A84J-01A | TCGA-TM-A84J | SORL1|RHBG | SORL1 | RHBG | 11 | 1 | 1 | 1 | 4 | 6 | 5 | 2.7 | 121367758 | 156352539 | tier1 | Out-of-frame | 16602 | NA | 0 |
| LGG | TCGA-DU-7007-01A | TCGA-DU-7007 | SOX5|MANSC1 | SOX5 | MANSC1 | 12 | 12 | -1 | -1 | 14 | 6 | 5 | 2.3 | 23757321 | 12496348 | tier1 | CDS-5UTR | 16621 | NA | 0 |
| LGG | TCGA-FG-5963-01A | TCGA-FG-5963 | SOX6|PTPRJ | SOX6 | PTPRJ | 11 | 11 | -1 | 1 | 9 | 16 | 15 | 0.72 | 16362558 | 48134299 | tier1 | Out-of-frame | 16628 | NA | 0 |
| LGG | TCGA-DU-A76L-01A | TCGA-DU-A76L | SQSTM1|NTRK2 | SQSTM1 | NTRK2 | 5 | 9 | 1 | 1 | 12 | 17 | 13 | 0.88 | 179252226 | 87549077 | tier1 | In-frame | 16813 | NA | 0 |
| LGG | TCGA-TM-A84I-01A | TCGA-TM-A84I | SSPN|TEAD4 | SSPN | TEAD4 | 12 | 12 | 1 | 1 | 6 | 23 | 21 | 2 | 26287963 | 3103904 | tier1 | NA | 16917 | NA | 0 |
| LGG | TCGA-HT-A5R7-01A | TCGA-HT-A5R7 | ST7|MET | ST7 | MET | 7 | 7 | 1 | 1 | 4 | 2 | 2 | 0.69 | 116660683 | 116339125 | tier1 | 5UTR-5UTR | 16966 | validated | 0 |
| LGG | TCGA-TQ-A7RV-01A | TCGA-TQ-A7RV | STIM1|ANO9 | STIM1 | ANO9 | 11 | 11 | 1 | -1 | 2 | 2 | 2 | 0.1 | 4045217 | 434098 | tier3 | Out-of-frame | 17033 | non-validated | 0 |
| LGG | TCGA-TQ-A7RM-01A | TCGA-TQ-A7RM | STK39|C9orf5 | STK39 | C9orf5 | 2 | 9 | -1 | -1 | 6 | 4 | 4 | 0.31 | 168931492 | 111870850 | tier1 | In-frame | 17086 | NA | 0 |
| LGG | TCGA-DU-8166-01A | TCGA-DU-8166 | SYMPK|ELSPBP1 | SYMPK | ELSPBP1 | 19 | 19 | -1 | 1 | 2 | 2 | 2 | 1.9 | 46321217 | 48511908 | tier3 | CDS-5UTR | 17234 | NA | 0 |
| LGG | TCGA-E1-A7YH-01A | TCGA-E1-A7YH | SYMPK|LSM4 | SYMPK | LSM4 | 19 | 19 | -1 | -1 | 2 | 3 | 3 | 0.59 | 46366316 | 18426875 | tier3 | 5UTR-CDS | 17235 | NA | 0 |
| LGG | TCGA-FG-A87Q-01A | TCGA-FG-A87Q | TANC2|TMEM104 | TANC2 | TMEM104 | 17 | 17 | 1 | 1 | 2 | 2 | 2 | 0.57 | 61151375 | 72781621 | tier3 | Out-of-frame | 17384 | NA | 0 |
| LGG | TCGA-DB-A75P-01A | TCGA-DB-A75P | TAOK1|TMEM97 | TAOK1 | TMEM97 | 17 | 17 | 1 | 1 | 2 | 1 | 1 | 0.42 | 27718042 | 26652529 | tier3 | 5UTR-CDS | 17406 | NA | 0 |
| LGG | TCGA-S9-A7R3-01A | TCGA-S9-A7R3 | TCERG1L|CNTN1 | TCERG1L | CNTN1 | 10 | 12 | -1 | 1 | 10 | 10 | 7 | 0.14 | 133106474 | 41302159 | tier1 | CDS-5UTR | 17579 | NA | 0 |
| LGG | TCGA-HT-7477-01B | TCGA-HT-7477 | THRB|PVRL3 | THRB | PVRL3 | 3 | 3 | -1 | 1 | 23 | 8 | 7 | 0.97 | 24338717 | 110830877 | tier1 | 5UTR-CDS | 17795 | NA | 0 |
| LGG | TCGA-DU-6542-01A | TCGA-DU-6542 | TMCC2|HMCN1 | TMCC2 | HMCN1 | 1 | 1 | 1 | 1 | 2 | 1 | 1 | 2.4 | 205197899 | 185931650 | tier2 | Out-of-frame | 17899 | NA | 0 |
| LGG | TCGA-TM-A84B-01A | TCGA-TM-A84B | TNIK|KCNMB2 | TNIK | KCNMB2 | 3 | 3 | -1 | 1 | 22 | 18 | 18 | 0.18 | 171087409 | 178525131 | tier1 | CDS-5UTR | 18347 | NA | 0 |
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