Transcript Fusion
The transcript fusion data of TCGA were retrieved from the TumorFusions database.
List of the transcript fusions of the GESPs in each cancer type
| Showing page 137 |
first page | previous page | next page | last page |
| Cancer Type | TCGA_barcode | Patient | Fusion_transcript | Gene_A | Gene_B | Chr_A | Chr_B | Strand_A | Strand_B | #_Discordant_Pairs | #_JSR | #_perfect_JSR | Evalue | Junction_A | Junction_B | Tier | Frame | TN | WGS_validation | Centrality |
| LGG | TCGA-E1-A7YL-01A | TCGA-E1-A7YL | RYR3|BUB1B | RYR3 | BUB1B | 15 | 15 | 1 | 1 | 6 | 8 | 6 | 0.17 | 33765739 | 40457254 | tier1 | Out-of-frame | 15221 | NA | 0 |
| LGG | TCGA-TM-A7CF-01A | TCGA-TM-A7CF | SBNO2|CLEC4M | SBNO2 | CLEC4M | 19 | 19 | -1 | 1 | 3 | 4 | 4 | 0.097 | 1147308 | 7830524 | tier1 | Out-of-frame | 15350 | non-validated | 0 |
| LGG | TCGA-WY-A85A-01A | TCGA-WY-A85A | SCARB1|RIMBP2 | SCARB1 | RIMBP2 | 12 | 12 | -1 | -1 | 4 | 2 | 1 | 2.5 | 125270903 | 131002462 | tier2 | CDS-5UTR | 15391 | NA | 0 |
| LGG | TCGA-DH-A66G-01A | TCGA-DH-A66G | SCN8A|ATF1 | SCN8A | ATF1 | 12 | 12 | 1 | 1 | 4 | 7 | 6 | 1.9 | 52184286 | 51189692 | tier1 | In-frame | 15428 | NA | 0 |
| LGG | TCGA-HT-A5RC-01A | TCGA-HT-A5RC | SCRIB|NRBP2 | SCRIB | NRBP2 | 8 | 8 | -1 | -1 | 32 | 13 | 12 | 0.67 | 144897384 | 144922401 | tier1 | In-frame | 15437 | NA | 0 |
| LGG | TCGA-CS-5395-01A | TCGA-CS-5395 | SDC3|SLC1A3 | SDC3 | SLC1A3 | 1 | 5 | -1 | 1 | 3 | 2 | 1 | 0.27 | 31342314 | 36606541 | tier3 | NA | 15465 | non-validated | 0 |
| LGG | TCGA-HT-8564-01A | TCGA-HT-8564 | SDC3|ZNF827 | SDC3 | ZNF827 | 1 | 4 | -1 | -1 | 2 | 12 | 10 | 0.49 | 31342314 | 146859787 | tier3 | 3UTR-5UTR | 15466 | NA | 0 |
| LGG | TCGA-VM-A8CD-01A | TCGA-VM-A8CD | SEC24A|KCNK7 | SEC24A | KCNK7 | 5 | 11 | 1 | -1 | 118 | 74 | 66 | 0.1 | 133984863 | 65361345 | tier1 | In-frame | 15514 | NA | 0 |
| LGG | TCGA-DU-A7TC-01A | TCGA-DU-A7TC | SEMA6D|EXD1 | SEMA6D | EXD1 | 15 | 15 | 1 | -1 | 5 | 4 | 4 | 0.18 | 48009889 | 41488053 | tier1 | 5UTR-CDS | 15570 | NA | 0 |
| LGG | TCGA-FG-5965-02A | TCGA-FG-5965 | SGCB|TXLNA | SGCB | TXLNA | 4 | 1 | -1 | 1 | 2 | 8 | 8 | 0.79 | 52904393 | 32655656 | tier2 | In-frame | 15774 | non-validated | 0 |
| LGG | TCGA-CS-5397-01A | TCGA-CS-5397 | SHB|GRIN2A | SHB | GRIN2A | 9 | 16 | -1 | -1 | 2 | 4 | 4 | 1.4 | 37955880 | 9943818 | tier2 | Out-of-frame | 15870 | NA | 0 |
| LGG | TCGA-DB-5270-01A | TCGA-DB-5270 | SHC2|TJP3 | SHC2 | TJP3 | 19 | 19 | -1 | 1 | 5 | 4 | 3 | 0.002 | 440862 | 3750136 | tier1 | Out-of-frame | 15884 | NA | 0 |
| LGG | TCGA-DU-7298-01A | TCGA-DU-7298 | SIK2|MEGF11 | SIK2 | MEGF11 | 11 | 15 | 1 | -1 | 6 | 8 | 8 | 2.1 | 111558886 | 66274826 | tier1 | In-frame | 15913 | NA | 0 |
| LGG | TCGA-DU-6406-01A | TCGA-DU-6406 | SIM2|KCNJ6 | SIM2 | KCNJ6 | 21 | 21 | 1 | -1 | 40 | 23 | 21 | 1.4 | 38072221 | 39213011 | tier1 | CDS-5UTR | 15930 | NA | 0 |
| LGG | TCGA-DU-6397-01A | TCGA-DU-6397 | SLC1A3|RABEP1 | SLC1A3 | RABEP1 | 5 | 17 | 1 | 1 | 2 | 10 | 7 | 0.8 | 36688434 | 5283828 | tier4 | NA | 16048 | non-validated | 0 |
| LGG | TCGA-HT-A617-01A | TCGA-HT-A617 | SLC47A2|ALDH3A1 | SLC47A2 | ALDH3A1 | 17 | 17 | -1 | -1 | 40 | 18 | 16 | 1.9 | 19616016 | 19646776 | tier1 | In-frame | 16266 | NA | 0 |
| LGG | TCGA-FG-5963-01A | TCGA-FG-5963 | SLC4A7|TYR | SLC4A7 | TYR | 3 | 11 | -1 | 1 | 4 | 2 | 2 | 0.68 | 27525558 | 88924370 | tier1 | In-frame | 16276 | NA | 0 |
| LGG | TCGA-TM-A84B-01A | TCGA-TM-A84B | SLC7A1|USPL1 | SLC7A1 | USPL1 | 13 | 13 | -1 | 1 | 2 | 4 | 4 | 0.081 | 30127898 | 31195901 | tier3 | 5UTR-CDS | 16289 | NA | 0 |
| LGG | TCGA-DB-5277-01A | TCGA-DB-5277 | SLCO3A1|HDDC3 | SLCO3A1 | HDDC3 | 15 | 15 | 1 | -1 | 7 | 6 | 6 | 0.19 | 92397318 | 91475340 | tier1 | Out-of-frame | 16314 | NA | 0 |
| LGG | TCGA-DU-A7TD-01A | TCGA-DU-A7TD | SMARCAD1|GRID2 | SMARCAD1 | GRID2 | 4 | 4 | 1 | 1 | 18 | 21 | 19 | 0.27 | 95174158 | 94547420 | tier1 | In-frame | 16381 | NA | 0 |
|
Showing page 137 |
first page | previous page | next page | last page |
Copyright © 2020 University of Pennsylvania. All Rights Reserved.