Transcript Fusion
The transcript fusion data of TCGA were retrieved from the TumorFusions database.
List of the transcript fusions of the GESPs in each cancer type
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| Cancer Type | TCGA_barcode | Patient | Fusion_transcript | Gene_A | Gene_B | Chr_A | Chr_B | Strand_A | Strand_B | #_Discordant_Pairs | #_JSR | #_perfect_JSR | Evalue | Junction_A | Junction_B | Tier | Frame | TN | WGS_validation | Centrality |
| LGG | TCGA-DB-A4XH-01A | TCGA-DB-A4XH | PLEKHA7|ABCC8 | PLEKHA7 | ABCC8 | 11 | 11 | -1 | -1 | 2 | 1 | 1 | 0.24 | 17035536 | 17485151 | tier2 | Out-of-frame | 13008 | NA | 0.36276 |
| LGG | TCGA-HT-7902-01A | TCGA-HT-7902 | PLP1|SGK1 | PLP1 | SGK1 | X | 6 | 1 | -1 | 2 | 1 | 1 | 1.2 | 103047545 | 134639049 | tier3 | NA | 13044 | NA | 0.37969 |
| LGG | TCGA-DU-5847-01A | TCGA-DU-5847 | PLXDC2|C10orf112 | PLXDC2 | C10orf112 | 10 | 10 | 1 | 1 | 4 | 6 | 6 | 0.15 | 20106120 | 19856431 | tier1 | Out-of-frame | 13056 | NA | 0 |
| LGG | TCGA-TQ-A7RS-01A | TCGA-TQ-A7RS | PRKCH|MNAT1 | PRKCH | MNAT1 | 14 | 14 | 1 | 1 | 10 | 7 | 6 | 0.34 | 61789182 | 61434947 | tier1 | Out-of-frame | 13558 | NA | 0.39046 |
| LGG | TCGA-DU-6402-01A | TCGA-DU-6402 | PSMA6|PRKD1 | PSMA6 | PRKD1 | 14 | 14 | 1 | -1 | 14 | 5 | 4 | 1.6 | 35761758 | 30516993 | tier2 | NA | 13712 | NA | 0.38895 |
| LGG | TCGA-CS-6668-01A | TCGA-CS-6668 | PTPRA|SUPT16H | PTPRA | SUPT16H | 20 | 14 | 1 | -1 | 2 | 7 | 5 | 0.61 | 3019314 | 21829491 | tier3 | 3UTR-CDS | 13846 | non-validated | 0.38034 |
| LGG | TCGA-DU-A5TY-01A | TCGA-DU-A5TY | PTPRR|VWC2 | PTPRR | VWC2 | 12 | 7 | -1 | 1 | 2 | 3 | 3 | 0.019 | 71050484 | 49951630 | tier2 | Out-of-frame | 13914 | NA | 0 |
| LGG | TCGA-P5-A5EU-01A | TCGA-P5-A5EU | PTPRS|POU2F2 | PTPRS | POU2F2 | 19 | 19 | -1 | -1 | 2 | 1 | 1 | 0.35 | 5340675 | 42626728 | tier2 | 5UTR-CDS | 13917 | NA | 0 |
| LGG | TCGA-DH-5144-01A | TCGA-DH-5144 | PTPRZ1|FYN | PTPRZ1 | FYN | 7 | 6 | 1 | -1 | 2 | 91 | 79 | 0.3 | 121684622 | 112062296 | tier3 | NA | 13926 | NA | 0 |
| LGG | TCGA-DU-6407-02B | TCGA-DU-6407 | PTPRZ1|MET | PTPRZ1 | MET | 7 | 7 | 1 | 1 | 596 | 374 | 321 | 0.16 | 121513611 | 116339125 | tier1 | CDS-5UTR | 13929 | validated | 0 |
| LGG | TCGA-TM-A84I-01A | TCGA-TM-A84I | RAD17|CNTN5 | RAD17 | CNTN5 | 5 | 11 | 1 | 1 | 14 | 13 | 13 | 2.5 | 68677884 | 100226848 | tier1 | In-frame | 14156 | NA | 0 |
| LGG | TCGA-FG-A711-01A | TCGA-FG-A711 | RASA3|KCNG2 | RASA3 | KCNG2 | 13 | 18 | -1 | 1 | 21 | 29 | 22 | 2.5 | 114817527 | 77659040 | tier1 | Out-of-frame | 14360 | NA | 0 |
| LGG | TCGA-HT-7477-01B | TCGA-HT-7477 | RBBP8|FAM126A | RBBP8 | FAM126A | 18 | 7 | 1 | -1 | 2 | 1 | 1 | 2.6 | 20564953 | 23030758 | tier2 | CDS-5UTR | 14417 | NA | 0 |
| LGG | TCGA-TQ-A7RW-01A | TCGA-TQ-A7RW | RGMA|ADAMTSL3 | RGMA | ADAMTSL3 | 15 | 15 | -1 | 1 | 3 | 5 | 5 | 0.24 | 93632148 | 84581844 | tier1 | In-frame | 14630 | NA | 0 |
| LGG | TCGA-HT-A614-01A | TCGA-HT-A614 | RGMA|RHCG | RGMA | RHCG | 15 | 15 | -1 | -1 | 3 | 1 | 1 | 0.064 | 93632148 | 90026448 | tier4 | In-frame | 14631 | NA | 0 |
| LGG | TCGA-TQ-A7RM-01A | TCGA-TQ-A7RM | RGMB|CCDC112 | RGMB | CCDC112 | 5 | 5 | 1 | -1 | 129 | 84 | 74 | 0.42 | 98109910 | 114620605 | tier1 | Out-of-frame | 14632 | NA | 0 |
| LGG | TCGA-DB-5278-01A | TCGA-DB-5278 | RORA|CLSTN2 | RORA | CLSTN2 | 15 | 3 | -1 | 1 | 3 | 7 | 7 | 0.54 | 61521252 | 139894793 | tier1 | In-frame | 14906 | validated | 0 |
| LGG | TCGA-HT-7854-01A | TCGA-HT-7854 | RPN1|UTRN | RPN1 | UTRN | 3 | 6 | -1 | 1 | 2 | 1 | 1 | 1 | 128338817 | 144665237 | tier3 | NA | 15014 | NA | 0 |
| LGG | TCGA-DU-7006-01A | TCGA-DU-7006 | RPS6KA2|MCHR2 | RPS6KA2 | MCHR2 | 6 | 6 | -1 | -1 | 9 | 9 | 4 | 0.14 | 167271688 | 100404050 | tier1 | CDS-5UTR | 15047 | NA | 0 |
| LGG | TCGA-DU-6542-01A | TCGA-DU-6542 | RYR2|WLS | RYR2 | WLS | 1 | 1 | 1 | -1 | 2 | 11 | 11 | 1.6 | 237205869 | 68659910 | tier2 | Out-of-frame | 15219 | NA | 0 |
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