Transcript Fusion
The transcript fusion data of TCGA were retrieved from the TumorFusions database.
List of the transcript fusions of the GESPs in each cancer type
| Showing page 135 |
first page | previous page | next page | last page |
| Cancer Type | TCGA_barcode | Patient | Fusion_transcript | Gene_A | Gene_B | Chr_A | Chr_B | Strand_A | Strand_B | #_Discordant_Pairs | #_JSR | #_perfect_JSR | Evalue | Junction_A | Junction_B | Tier | Frame | TN | WGS_validation | Centrality |
| LGG | TCGA-HT-7690-01A | TCGA-HT-7690 | NRP1|CUL2 | NRP1 | CUL2 | 10 | 10 | -1 | -1 | 3 | 3 | 3 | 0.9 | 33619636 | 35299370 | tier1 | Out-of-frame | 11756 | NA | 0.38397 |
| LGG | TCGA-HT-A614-01A | TCGA-HT-A614 | NRXN3|IFT74 | NRXN3 | IFT74 | 14 | 9 | 1 | 1 | 4 | 1 | 1 | 4.6 | 80164280 | 27029023 | tier3 | Out-of-frame | 11767 | NA | 0.36645 |
| LGG | TCGA-S9-A89Z-01A | TCGA-S9-A89Z | NRXN3|TSHR | NRXN3 | TSHR | 14 | 14 | 1 | 1 | 2 | 1 | 1 | 2.8 | 79454484 | 81528492 | tier2 | Out-of-frame | 11768 | NA | 0.38204 |
| LGG | TCGA-HT-7686-01A | TCGA-HT-7686 | NTM|CCDC86 | NTM | CCDC86 | 11 | 11 | 1 | 1 | 2 | 3 | 3 | 2.6 | 131781542 | 60615397 | tier3 | In-frame | 11826 | NA | 0.33662 |
| LGG | TCGA-DB-5278-01A | TCGA-DB-5278 | NTRK2|LAP3 | NTRK2 | LAP3 | 9 | 4 | 1 | 1 | 2 | 2 | 1 | 0.65 | 87430621 | 17585225 | tier3 | NA | 11839 | NA | 0.38703 |
| LGG | TCGA-E1-5302-01A | TCGA-E1-5302 | NUMA1|FOLR1 | NUMA1 | FOLR1 | 11 | 11 | -1 | 1 | 18 | 13 | 10 | 0.028 | 71780888 | 71903210 | tier1 | 5UTR-5UTR | 11887 | NA | 0.35974 |
| LGG | TCGA-E1-5318-01A | TCGA-E1-5318 | P4HB|SOS1 | P4HB | SOS1 | 17 | 2 | -1 | -1 | 2 | 2 | 2 | 2.7 | 79801042 | 39222528 | tier3 | NA | 12154 | non-validated | 0.3877 |
| LGG | TCGA-E1-A7YD-01A | TCGA-E1-A7YD | PAICS|PDGFRA | PAICS | PDGFRA | 4 | 4 | 1 | 1 | 3 | 6 | 6 | 0.78 | 57302494 | 55136800 | tier1 | 5UTR-CDS | 12194 | NA | 0.37974 |
| LGG | TCGA-FG-A87N-01A | TCGA-FG-A87N | PALM2|MLLT3 | PALM2 | MLLT3 | 9 | 9 | 1 | -1 | 7 | 1 | 1 | 0.053 | 112542813 | 20456784 | tier3 | Out-of-frame | 12225 | NA | 0.36064 |
| LGG | TCGA-DU-A6S7-01A | TCGA-DU-A6S7 | PARD3|FAM188A | PARD3 | FAM188A | 10 | 10 | -1 | -1 | 2 | 1 | 1 | 0.15 | 35103804 | 15838171 | tier3 | In-frame | 12271 | NA | 0.37553 |
| LGG | TCGA-DH-A669-01A | TCGA-DH-A669 | PARD3|LYAR | PARD3 | LYAR | 10 | 4 | -1 | -1 | 174 | 91 | 85 | 0.027 | 35103804 | 4276496 | tier1 | In-frame | 12274 | non-validated | 0.37796 |
| LGG | TCGA-FG-A4MY-01A | TCGA-FG-A4MY | PC|FOLR1 | PC | FOLR1 | 11 | 11 | -1 | 1 | 2 | 1 | 1 | 0.69 | 66719901 | 71903210 | tier3 | 5UTR-5UTR | 12357 | NA | 0.3557 |
| LGG | TCGA-DU-A6S6-01A | TCGA-DU-A6S6 | PCDHGB4|TYK2 | PCDHGB4 | TYK2 | 5 | 19 | 1 | -1 | 2 | 4 | 1 | 0.2 | 140892546 | 10491352 | tier3 | 3UTR-5UTR | 12390 | NA | 0.37655 |
| LGG | TCGA-HT-7686-01A | TCGA-HT-7686 | PCNXL3|C11orf80 | PCNXL3 | C11orf80 | 11 | 11 | 1 | 1 | 27 | 13 | 8 | 0.59 | 65398075 | 66610320 | tier1 | Out-of-frame | 12437 | NA | 0 |
| LGG | TCGA-FG-6688-01A | TCGA-FG-6688 | PHGDH|ANXA1 | PHGDH | ANXA1 | 1 | 9 | 1 | 1 | 2 | 20 | 18 | 0.002 | 120286836 | 75772570 | tier3 | 3UTR-5UTR | 12742 | NA | 0.37774 |
| LGG | TCGA-DU-6396-01A | TCGA-DU-6396 | PHLDB1|IL10RA | PHLDB1 | IL10RA | 11 | 11 | 1 | 1 | 11 | 5 | 2 | 0.005 | 118478414 | 117864714 | tier1 | 5UTR-CDS | 12750 | NA | 0.37159 |
| LGG | TCGA-HT-A61B-01A | TCGA-HT-A61B | PIP5K1C|TJP3 | PIP5K1C | TJP3 | 19 | 19 | -1 | 1 | 2 | 2 | 2 | 0.046 | 3700295 | 3728602 | tier4 | Out-of-frame | 12881 | non-validated | 0.37065 |
| LGG | TCGA-HT-7467-01A | TCGA-HT-7467 | PKM2|ERBB3 | PKM2 | ERBB3 | 15 | 12 | -1 | 1 | 2 | 25 | 19 | 0.16 | 72491373 | 56492035 | tier4 | 3UTR-5UTR | 12912 | NA | 0.38486 |
| LGG | TCGA-DU-8161-01A | TCGA-DU-8161 | PKM2|SLC1A3 | PKM2 | SLC1A3 | 15 | 5 | -1 | 1 | 2 | 1 | 1 | 0.009 | 72491373 | 36606541 | tier3 | NA | 12916 | NA | 0.36469 |
| LGG | TCGA-FG-A4MW-01A | TCGA-FG-A4MW | PLEKHA6|LRRN2 | PLEKHA6 | LRRN2 | 1 | 1 | -1 | -1 | 20 | 98 | 95 | 0.91 | 204328822 | 204589346 | tier1 | 5UTR-5UTR | 13007 | NA | 0.36082 |
|
Showing page 135 |
first page | previous page | next page | last page |
Copyright © 2020 University of Pennsylvania. All Rights Reserved.