Transcript Fusion
The transcript fusion data of TCGA were retrieved from the TumorFusions database.
List of the transcript fusions of the GESPs in each cancer type
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| Cancer Type | TCGA_barcode | Patient | Fusion_transcript | Gene_A | Gene_B | Chr_A | Chr_B | Strand_A | Strand_B | #_Discordant_Pairs | #_JSR | #_perfect_JSR | Evalue | Junction_A | Junction_B | Tier | Frame | TN | WGS_validation | Centrality |
| LGG | TCGA-P5-A5EU-01A | TCGA-P5-A5EU | LRP3|VAV1 | LRP3 | VAV1 | 19 | 19 | 1 | 1 | 4 | 5 | 5 | 0.11 | 33687683 | 6820713 | tier1 | Out-of-frame | 9525 | NA | 0.38644 |
| LGG | TCGA-HT-7686-01A | TCGA-HT-7686 | LRP5|VPS37C | LRP5 | VPS37C | 11 | 11 | 1 | -1 | 3 | 2 | 2 | 0.15 | 68115711 | 60906307 | tier1 | CDS-5UTR | 9538 | NA | 0.37389 |
| LGG | TCGA-E1-5304-01A | TCGA-E1-5304 | LRP6|NINJ2 | LRP6 | NINJ2 | 12 | 12 | -1 | -1 | 297 | 256 | 209 | 0.13 | 12332744 | 675344 | tier1 | In-frame | 9548 | NA | 0.36767 |
| LGG | TCGA-TM-A84J-01A | TCGA-TM-A84J | LUZP1|SORL1 | LUZP1 | SORL1 | 1 | 11 | -1 | 1 | 6 | 13 | 12 | 0.28 | 23495259 | 121340716 | tier1 | 5UTR-CDS | 9692 | NA | 0.36311 |
| LGG | TCGA-HT-7477-01B | TCGA-HT-7477 | MAGI2|VWC2 | MAGI2 | VWC2 | 7 | 7 | -1 | 1 | 3 | 1 | 1 | 0.46 | 79082336 | 49842307 | tier3 | Out-of-frame | 9771 | NA | 0.36931 |
| LGG | TCGA-TM-A84I-01A | TCGA-TM-A84I | MARCH9|SLCO1B1 | MARCH9 | SLCO1B1 | 12 | 12 | 1 | 1 | 100 | 92 | 83 | 0.24 | 58150867 | 21325584 | tier1 | In-frame | 9992 | NA | 0 |
| LGG | TCGA-FG-A710-01A | TCGA-FG-A710 | MED16|PALM | MED16 | PALM | 19 | 19 | -1 | 1 | 12 | 5 | 5 | 1.1 | 893086 | 746285 | tier1 | 5UTR-CDS | 10203 | NA | 0.35634 |
| LGG | TCGA-TM-A84J-01A | TCGA-TM-A84J | MEF2D|SORL1 | MEF2D | SORL1 | 1 | 11 | -1 | 1 | 7 | 9 | 7 | 0.67 | 156470278 | 121424646 | tier1 | 5UTR-CDS | 10239 | NA | 0.38214 |
| LGG | TCGA-CS-6188-01A | TCGA-CS-6188 | MFSD2A|LAPTM5 | MFSD2A | LAPTM5 | 1 | 1 | 1 | -1 | 191 | 68 | 59 | 0.6 | 40421057 | 31215396 | tier1 | In-frame | 10292 | NA | 0.34981 |
| LGG | TCGA-WH-A86K-01A | TCGA-WH-A86K | MICA|NCR3 | MICA | NCR3 | 6 | 6 | 1 | -1 | 13 | 4 | 4 | 0.3 | 31371479 | 31557903 | tier1 | In-frame | 10339 | NA | 0.35353 |
| LGG | TCGA-FG-A87N-01A | TCGA-FG-A87N | MLLT3|PALM2 | MLLT3 | PALM2 | 9 | 9 | -1 | 1 | 4 | 2 | 2 | 0.053 | 20620653 | 112629771 | tier1 | Out-of-frame | 10517 | NA | 0.36064 |
| LGG | TCGA-HT-A5RC-01A | TCGA-HT-A5RC | MOBKL2B|PTPRD | MOBKL2B | PTPRD | 9 | 9 | -1 | -1 | 4 | 1 | 1 | 0.67 | 27359032 | 9766851 | tier2 | CDS-5UTR | 10567 | NA | 0.36835 |
| LGG | TCGA-S9-A6UA-01A | TCGA-S9-A6UA | MOBKL2B|SLC24A2 | MOBKL2B | SLC24A2 | 9 | 9 | -1 | -1 | 3 | 6 | 3 | 1.8 | 27529553 | 19622297 | tier2 | 5UTR-CDS | 10568 | NA | 0.35071 |
| LGG | TCGA-TM-A84B-01A | TCGA-TM-A84B | NAALADL2|TIGIT | NAALADL2 | TIGIT | 3 | 3 | 1 | 1 | 8 | 4 | 4 | 0.65 | 174455536 | 114012847 | tier1 | NA | 11058 | NA | 0.33409 |
| LGG | TCGA-HT-7468-01A | TCGA-HT-7468 | NADK|GNB1 | NADK | GNB1 | 1 | 1 | -1 | -1 | 23 | 49 | 49 | 1.4 | 1709728 | 1770677 | tier1 | 5UTR-5UTR | 11066 | NA | 0.37546 |
| LGG | TCGA-P5-A72W-01A | TCGA-P5-A72W | NCAM2|TMPRSS15 | NCAM2 | TMPRSS15 | 21 | 21 | 1 | -1 | 3 | 3 | 3 | 0.008 | 22370936 | 19653538 | tier1 | Out-of-frame | 11145 | NA | 0.35169 |
| LGG | TCGA-FG-5963-01A | TCGA-FG-5963 | NCKAP5|DYNC2H1 | NCKAP5 | DYNC2H1 | 2 | 11 | -1 | 1 | 7 | 10 | 10 | 0.31 | 133971288 | 103306671 | tier1 | In-frame | 11164 | NA | 0.34169 |
| LGG | TCGA-DU-A7TD-01A | TCGA-DU-A7TD | NFASC|ATP2B4 | NFASC | ATP2B4 | 1 | 1 | 1 | 1 | 439 | 355 | 308 | 0.28 | 204797910 | 203667285 | tier1 | 5UTR-CDS | 11424 | NA | 0.37841 |
| LGG | TCGA-FG-6688-01A | TCGA-FG-6688 | NFASC|PPP1R12B | NFASC | PPP1R12B | 1 | 1 | 1 | 1 | 41 | 20 | 19 | 0.35 | 204957934 | 202531906 | tier1 | Out-of-frame | 11428 | NA | 0.36773 |
| LGG | TCGA-DU-6402-01A | TCGA-DU-6402 | NRCAM|TLN1 | NRCAM | TLN1 | 7 | 9 | -1 | -1 | 2 | 1 | 1 | 0.6 | 107788096 | 35720506 | tier3 | 3UTR-CDS | 11737 | NA | 0.37792 |
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