Transcript Fusion
The transcript fusion data of TCGA were retrieved from the TumorFusions database.
List of the transcript fusions of the GESPs in each cancer type
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| Cancer Type | TCGA_barcode | Patient | Fusion_transcript | Gene_A | Gene_B | Chr_A | Chr_B | Strand_A | Strand_B | #_Discordant_Pairs | #_JSR | #_perfect_JSR | Evalue | Junction_A | Junction_B | Tier | Frame | TN | WGS_validation | Centrality |
| LGG | TCGA-HT-7470-01A | TCGA-HT-7470 | ITM2C|TYK2 | ITM2C | TYK2 | 2 | 19 | 1 | -1 | 2 | 7 | 7 | 0.32 | 231743962 | 10491352 | tier4 | 3UTR-5UTR | 8431 | NA | 0.37502 |
| LGG | TCGA-HT-7690-01A | TCGA-HT-7690 | ITPR2|ADIPOR2 | ITPR2 | ADIPOR2 | 12 | 12 | -1 | 1 | 18 | 22 | 20 | 0.43 | 26943090 | 1882008 | tier1 | Out-of-frame | 8450 | NA | 0.36432 |
| LGG | TCGA-DH-A66G-01A | TCGA-DH-A66G | KCNA6|C3AR1 | KCNA6 | C3AR1 | 12 | 12 | 1 | -1 | 15 | 1 | 1 | 0.036 | 4923944 | 8212791 | tier3 | 3UTR-5UTR | 8564 | NA | 0.35878 |
| LGG | TCGA-TM-A84H-01A | TCGA-TM-A84H | KCNB1|ZFPM2 | KCNB1 | ZFPM2 | 20 | 8 | -1 | 1 | 9 | 4 | 3 | 0.1 | 48098451 | 106431372 | tier1 | CDS-5UTR | 8569 | NA | 0.37171 |
| LGG | TCGA-E1-5304-01A | TCGA-E1-5304 | KCNJ10|CISD2 | KCNJ10 | CISD2 | 1 | 4 | -1 | 1 | 170 | 78 | 66 | 1.5 | 160039812 | 103806373 | tier1 | 5UTR-CDS | 8575 | NA | 0.353 |
| LGG | TCGA-DH-A66D-01A | TCGA-DH-A66D | KCNK13|TDP1 | KCNK13 | TDP1 | 14 | 14 | 1 | 1 | 7 | 2 | 1 | 4 | 90528883 | 90509414 | tier2 | In-frame | 8578 | NA | 0.35215 |
| LGG | TCGA-VV-A86M-01A | TCGA-VV-A86M | KDM5C|MAGT1 | KDM5C | MAGT1 | X | X | -1 | -1 | 3 | 3 | 2 | 0.25 | 53222619 | 77086392 | tier1 | Out-of-frame | 8701 | NA | 0.32936 |
| LGG | TCGA-HT-7691-01A | TCGA-HT-7691 | KIAA1549|BRAF | KIAA1549 | BRAF | 7 | 7 | -1 | -1 | 3 | 1 | 1 | 0.31 | 138545885 | 140487384 | tier2 | In-frame | 8887 | NA | 0.38645 |
| LGG | TCGA-DU-6407-02B | TCGA-DU-6407 | KIF5B|SVIL | KIF5B | SVIL | 10 | 10 | -1 | -1 | 17 | 18 | 16 | 0.48 | 32337392 | 29975580 | tier1 | CDS-5UTR | 9013 | non-validated | 0.36981 |
| LGG | TCGA-S9-A89Z-01A | TCGA-S9-A89Z | KIT|HOPX | KIT | HOPX | 4 | 4 | 1 | -1 | 5 | 4 | 3 | 0.025 | 55524248 | 57522178 | tier1 | CDS-5UTR | 9028 | NA | 0.38944 |
| LGG | TCGA-TQ-A7RF-01A | TCGA-TQ-A7RF | LAMA4|TSPAN18 | LAMA4 | TSPAN18 | 6 | 11 | -1 | 1 | 5 | 5 | 5 | 3.4 | 112496515 | 44927958 | tier1 | CDS-5UTR | 9193 | NA | 0.37145 |
| LGG | TCGA-TM-A84B-01A | TCGA-TM-A84B | LGALS13|PTPRH | LGALS13 | PTPRH | 19 | 19 | 1 | -1 | 8 | 2 | 2 | 0.29 | 40096028 | 55699536 | tier1 | Out-of-frame | 9305 | NA | 0.36971 |
| LGG | TCGA-HT-A614-01A | TCGA-HT-A614 | LHFPL2|CSNK1A1 | LHFPL2 | CSNK1A1 | 5 | 5 | -1 | -1 | 6 | 2 | 2 | 0.09 | 77860636 | 148904734 | tier1 | 5UTR-CDS | 9321 | NA | 0.37996 |
| LGG | TCGA-DU-7006-01A | TCGA-DU-7006 | LIFR|PNPLA8 | LIFR | PNPLA8 | 5 | 7 | -1 | -1 | 2 | 8 | 7 | 0.44 | 38556436 | 108161965 | tier4 | 5UTR-5UTR | 9329 | NA | 0.37478 |
| LGG | TCGA-TM-A7CF-01A | TCGA-TM-A7CF | LMBRD1|ZBTB45 | LMBRD1 | ZBTB45 | 6 | 19 | -1 | -1 | 2 | 1 | 1 | 0.18 | 70506705 | 59029040 | tier3 | In-frame | 9396 | non-validated | 0.36249 |
| LGG | TCGA-DB-5281-01A | TCGA-DB-5281 | LMBRD2|KCNMB1 | LMBRD2 | KCNMB1 | 5 | 5 | -1 | -1 | 2 | 1 | 1 | 0.5 | 36136411 | 169812475 | tier2 | CDS-5UTR | 9398 | NA | 0.34882 |
| LGG | TCGA-S9-A89Z-01A | TCGA-S9-A89Z | LONP2|CHRM3 | LONP2 | CHRM3 | 16 | 1 | 1 | 1 | 2 | 4 | 4 | 0.047 | 48368269 | 240070733 | tier2 | CDS-5UTR | 9430 | NA | 0.37676 |
| LGG | TCGA-DB-A64X-01A | TCGA-DB-A64X | LPHN3|DBX2 | LPHN3 | DBX2 | 4 | 12 | 1 | -1 | 3 | 1 | 1 | 2.4 | 62453158 | 45429897 | tier3 | Out-of-frame | 9448 | NA | 0.35452 |
| LGG | TCGA-HT-7477-01B | TCGA-HT-7477 | LPHN3|ST3GAL5 | LPHN3 | ST3GAL5 | 4 | 2 | 1 | -1 | 2 | 1 | 1 | 0.57 | 62453158 | 86090608 | tier3 | Out-of-frame | 9450 | NA | 0.34866 |
| LGG | TCGA-P5-A77W-01A | TCGA-P5-A77W | LRFN5|DPF3 | LRFN5 | DPF3 | 14 | 14 | 1 | -1 | 3 | 1 | 1 | 2.2 | 42077765 | 73238601 | tier2 | 5UTR-CDS | 9496 | NA | 0.34885 |
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