Transcript Fusion
The transcript fusion data of TCGA were retrieved from the TumorFusions database.
List of the transcript fusions of the GESPs in each cancer type
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| Cancer Type | TCGA_barcode | Patient | Fusion_transcript | Gene_A | Gene_B | Chr_A | Chr_B | Strand_A | Strand_B | #_Discordant_Pairs | #_JSR | #_perfect_JSR | Evalue | Junction_A | Junction_B | Tier | Frame | TN | WGS_validation | Centrality |
| LGG | TCGA-DU-6542-01A | TCGA-DU-6542 | GLG1|CFDP1 | GLG1 | CFDP1 | 16 | 16 | -1 | -1 | 41 | 15 | 7 | 0.12 | 74640555 | 75327940 | tier1 | Out-of-frame | 7095 | NA | 0.36192 |
| LGG | TCGA-QH-A6CV-01A | TCGA-QH-A6CV | GNAI3|GPR61 | GNAI3 | GPR61 | 1 | 1 | 1 | 1 | 7 | 6 | 6 | 2 | 110091460 | 110087933 | tier1 | NA | 7174 | NA | 0.37635 |
| LGG | TCGA-CS-6668-01A | TCGA-CS-6668 | GNAS|BIRC6 | GNAS | BIRC6 | 20 | 2 | 1 | 1 | 2 | 17 | 12 | 2.1 | 57486241 | 32820101 | tier4 | 3UTR-CDS | 7183 | non-validated | 0.3819 |
| LGG | TCGA-CS-5395-01A | TCGA-CS-5395 | GNAS|ZNFX1 | GNAS | ZNFX1 | 20 | 20 | 1 | -1 | 2 | 12 | 9 | 3.4 | 57486241 | 47863418 | tier4 | 3UTR-CDS | 7208 | non-validated | 0.37375 |
| LGG | TCGA-CS-6665-01A | TCGA-CS-6665 | GOSR1|JUP | GOSR1 | JUP | 17 | 17 | 1 | -1 | 2 | 1 | 1 | 2.3 | 28811788 | 39921319 | tier3 | In-frame | 7305 | non-validated | 0.37057 |
| LGG | TCGA-TM-A7C3-01A | TCGA-TM-A7C3 | GPBP1L1|PVR | GPBP1L1 | PVR | 1 | 19 | -1 | 1 | 17 | 7 | 5 | 2.7 | 46124700 | 45153081 | tier1 | Out-of-frame | 7320 | NA | 0.36762 |
| LGG | TCGA-TQ-A7RW-01A | TCGA-TQ-A7RW | GPHN|PRKD1 | GPHN | PRKD1 | 14 | 14 | 1 | -1 | 2 | 1 | 1 | 2 | 67147903 | 30135414 | tier3 | Out-of-frame | 7339 | NA | 0.38645 |
| LGG | TCGA-HT-7611-01A | TCGA-HT-7611 | GPM6B|CHD1 | GPM6B | CHD1 | X | 5 | -1 | -1 | 2 | 5 | 2 | 0.24 | 13789575 | 98219587 | tier3 | NA | 7345 | NA | 0.36628 |
| LGG | TCGA-DU-6402-01A | TCGA-DU-6402 | GPR156|EPB41L2 | GPR156 | EPB41L2 | 3 | 6 | -1 | -1 | 2 | 2 | 2 | 0.21 | 120003876 | 131277639 | tier2 | 5UTR-5UTR | 7365 | NA | 0.36934 |
| LGG | TCGA-DB-5277-01A | TCGA-DB-5277 | GRIA4|NAALAD2 | GRIA4 | NAALAD2 | 11 | 11 | 1 | 1 | 77 | 44 | 39 | 0.21 | 105732934 | 89906992 | tier2 | In-frame | 7441 | NA | 0.37393 |
| LGG | TCGA-TM-A7CF-01A | TCGA-TM-A7CF | GRIK2|EYS | GRIK2 | EYS | 6 | 6 | 1 | -1 | 2 | 2 | 2 | 0.53 | 101847268 | 65767620 | tier3 | In-frame | 7448 | validated | 0.36493 |
| LGG | TCGA-TM-A84I-01A | TCGA-TM-A84I | GRIN2A|RASSF8 | GRIN2A | RASSF8 | 16 | 12 | -1 | 1 | 17 | 8 | 7 | 0.23 | 10273855 | 26208212 | tier1 | CDS-5UTR | 7455 | NA | 0.38206 |
| LGG | TCGA-HT-7611-01A | TCGA-HT-7611 | HCFC2|ANKS1B | HCFC2 | ANKS1B | 12 | 12 | 1 | -1 | 4 | 2 | 2 | 0.16 | 104492258 | 99640642 | tier1 | Out-of-frame | 7606 | NA | 0.37191 |
| LGG | TCGA-FG-8187-01A | TCGA-FG-8187 | HCN2|BSG | HCN2 | BSG | 19 | 19 | 1 | 1 | 17 | 22 | 20 | 0.85 | 590577 | 579500 | tier1 | Out-of-frame | 7610 | NA | 0.36596 |
| LGG | TCGA-FG-8191-01A | TCGA-FG-8191 | HSPA1B|SLC1A3 | HSPA1B | SLC1A3 | 6 | 5 | 1 | 1 | 2 | 2 | 2 | 4.6 | 31798031 | 36606541 | tier3 | NA | 7995 | NA | 0.3702 |
| LGG | TCGA-DB-5277-01A | TCGA-DB-5277 | IGDCC3|GLDN | IGDCC3 | GLDN | 15 | 15 | -1 | 1 | 49 | 48 | 44 | 0.23 | 65667435 | 51675982 | tier1 | In-frame | 8086 | NA | 0.33331 |
| LGG | TCGA-DU-8163-01A | TCGA-DU-8163 | IGFN1|KANK1 | IGFN1 | KANK1 | 1 | 9 | 1 | 1 | 31 | 21 | 17 | 0.006 | 201191955 | 734748 | tier1 | Out-of-frame | 8124 | NA | 0.36032 |
| LGG | TCGA-S9-A6WH-01A | TCGA-S9-A6WH | IL27RA|RLN3 | IL27RA | RLN3 | 19 | 19 | 1 | 1 | 41 | 49 | 42 | 0.019 | 14160126 | 14141522 | tier1 | In-frame | 8190 | NA | 0.36098 |
| LGG | TCGA-HT-7477-01B | TCGA-HT-7477 | ITGA4|UBE2E2 | ITGA4 | UBE2E2 | 2 | 3 | 1 | 1 | 5 | 9 | 9 | 0.41 | 182323044 | 23541099 | tier1 | Out-of-frame | 8380 | NA | 0.37773 |
| LGG | TCGA-HT-7478-01A | TCGA-HT-7478 | ITM2C|SEPT9 | ITM2C | SEPT9 | 2 | 17 | 1 | 1 | 2 | 6 | 1 | 0.094 | 231743963 | 75398141 | tier3 | 3UTR-CDS | 8429 | NA | 0 |
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