Transcript Fusion
The transcript fusion data of TCGA were retrieved from the TumorFusions database.
List of the transcript fusions of the GESPs in each cancer type
| Showing page 131 |
first page | previous page | next page | last page |
| Cancer Type | TCGA_barcode | Patient | Fusion_transcript | Gene_A | Gene_B | Chr_A | Chr_B | Strand_A | Strand_B | #_Discordant_Pairs | #_JSR | #_perfect_JSR | Evalue | Junction_A | Junction_B | Tier | Frame | TN | WGS_validation | Centrality |
| LGG | TCGA-TQ-A7RK-02B | TCGA-TQ-A7RK | DTNA|CD82 | DTNA | CD82 | 18 | 11 | 1 | 1 | 10 | 5 | 5 | 0.53 | 32346005 | 44609025 | tier1 | CDS-5UTR | 5156 | non-validated | 0.37575 |
| LGG | TCGA-DU-6406-01A | TCGA-DU-6406 | EGFR|SEPT14 | EGFR | SEPT14 | 7 | 7 | 1 | -1 | 470 | 2978 | 2490 | 1.3 | 55268106 | 55863785 | tier1 | In-frame | 5384 | NA | 0 |
| LGG | TCGA-HT-7686-01A | TCGA-HT-7686 | EHD1|ADRBK2 | EHD1 | ADRBK2 | 11 | 22 | -1 | 1 | 9 | 8 | 8 | 0.47 | 64627396 | 26057543 | tier1 | In-frame | 5400 | NA | 0.38411 |
| LGG | TCGA-E1-5307-01A | TCGA-E1-5307 | EIF4G2|ERBB3 | EIF4G2 | ERBB3 | 11 | 12 | -1 | 1 | 2 | 4 | 2 | 0.84 | 10818601 | 56492035 | tier3 | NA | 5467 | NA | 0.38493 |
| LGG | TCGA-E1-5304-01A | TCGA-E1-5304 | EIF4G3|ECE1 | EIF4G3 | ECE1 | 1 | 1 | -1 | -1 | 2 | 2 | 2 | 0.093 | 21377359 | 21616649 | tier3 | 5UTR-CDS | 5475 | NA | 0.36349 |
| LGG | TCGA-HT-8107-01A | TCGA-HT-8107 | EPB49|SCN2A | EPB49 | SCN2A | 8 | 2 | 1 | 1 | 2 | 16 | 6 | 0.87 | 21940035 | 166150541 | tier3 | 3UTR-5UTR | 5657 | NA | 0.36268 |
| LGG | TCGA-HT-A617-01A | TCGA-HT-A617 | EPHB1|BFSP2 | EPHB1 | BFSP2 | 3 | 3 | 1 | 1 | 20 | 10 | 8 | 0.9 | 134873118 | 133166161 | tier1 | In-frame | 5676 | NA | 0.38494 |
| LGG | TCGA-TM-A84J-01A | TCGA-TM-A84J | EPHB2|NTRK1 | EPHB2 | NTRK1 | 1 | 1 | 1 | 1 | 129 | 71 | 62 | 0.13 | 23111569 | 156843425 | tier1 | In-frame | 5677 | NA | 0.39024 |
| LGG | TCGA-KT-A7W1-01A | TCGA-KT-A7W1 | EPHB2|PDZD4 | EPHB2 | PDZD4 | 1 | X | 1 | -1 | 15 | 24 | 19 | 0.17 | 23111569 | 153074050 | tier1 | Out-of-frame | 5678 | NA | 0.38244 |
| LGG | TCGA-FG-8185-01A | TCGA-FG-8185 | FAM171A1|ANKRD26 | FAM171A1 | ANKRD26 | 10 | 10 | -1 | -1 | 4 | 5 | 5 | 0.93 | 15412955 | 27318285 | tier1 | Out-of-frame | 6097 | NA | 0.34145 |
| LGG | TCGA-DB-A4XE-01A | TCGA-DB-A4XE | FAM188A|CACNB2 | FAM188A | CACNB2 | 10 | 10 | -1 | 1 | 2 | 6 | 4 | 1.4 | 15902205 | 18787284 | tier2 | Out-of-frame | 6113 | NA | 0.368 |
| LGG | TCGA-FG-5963-01A | TCGA-FG-5963 | FGF12|LAMP3 | FGF12 | LAMP3 | 3 | 3 | -1 | -1 | 8 | 2 | 2 | 0.11 | 192444970 | 182872179 | tier1 | In-frame | 6444 | NA | 0.35389 |
| LGG | TCGA-CS-6186-01A | TCGA-CS-6186 | FGFR3|ELAVL3 | FGFR3 | ELAVL3 | 4 | 19 | 1 | -1 | 308 | 76 | 65 | 0.72 | 1808661 | 11577642 | tier1 | In-frame | 6474 | non-validated | 0.38386 |
| LGG | TCGA-TM-A84B-01A | TCGA-TM-A84B | FGFR3|FBXO28 | FGFR3 | FBXO28 | 4 | 1 | 1 | 1 | 1286 | 716 | 649 | 100 | 1808661 | 224340844 | tier1 | In-frame | 6475 | NA | 0.38292 |
| LGG | TCGA-FG-7643-01A | TCGA-FG-7643 | FGFR3|TACC3 | FGFR3 | TACC3 | 4 | 4 | 1 | 1 | 3421 | 3247 | 2979 | 0.12 | 1808661 | 1741429 | tier1 | In-frame | 6502 | validated | 0.38077 |
| LGG | TCGA-P5-A72U-01A | TCGA-P5-A72U | FGFR3|TACC3 | FGFR3 | TACC3 | 4 | 4 | 1 | 1 | 878 | 719 | 616 | 0.12 | 1808661 | 1732899 | tier1 | In-frame | 6506 | NA | 0.38077 |
| LGG | TCGA-CS-4941-01A | TCGA-CS-4941 | FHIT|PTPRG | FHIT | PTPRG | 3 | 3 | -1 | 1 | 3 | 1 | 1 | 0.043 | 61236975 | 61734552 | tier2 | 5UTR-CDS | 6524 | NA | 0.36774 |
| LGG | TCGA-FG-A4MT-01A | TCGA-FG-A4MT | FRMD4A|C10orf112 | FRMD4A | C10orf112 | 10 | 10 | -1 | 1 | 2 | 1 | 1 | 0.32 | 13735898 | 19780446 | tier4 | In-frame | 6719 | non-validated | 0 |
| LGG | TCGA-DU-6403-01A | TCGA-DU-6403 | FRMD4A|OR13A1 | FRMD4A | OR13A1 | 10 | 10 | -1 | -1 | 2 | 8 | 8 | 1.8 | 14050059 | 45799948 | tier2 | CDS-5UTR | 6721 | NA | 0.35678 |
| LGG | TCGA-DU-A5TY-01A | TCGA-DU-A5TY | FRS2|GRIP1 | FRS2 | GRIP1 | 12 | 12 | 1 | -1 | 20 | 6 | 6 | 0.1 | 69864310 | 66800208 | tier2 | 5UTR-CDS | 6755 | NA | 0.37859 |
|
Showing page 131 |
first page | previous page | next page | last page |
Copyright © 2020 University of Pennsylvania. All Rights Reserved.