Transcript Fusion
The transcript fusion data of TCGA were retrieved from the TumorFusions database.
List of the transcript fusions of the GESPs in each cancer type
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| Cancer Type | TCGA_barcode | Patient | Fusion_transcript | Gene_A | Gene_B | Chr_A | Chr_B | Strand_A | Strand_B | #_Discordant_Pairs | #_JSR | #_perfect_JSR | Evalue | Junction_A | Junction_B | Tier | Frame | TN | WGS_validation | Centrality |
| LGG | TCGA-FG-8189-01B | TCGA-FG-8189 | CKB|SCN2A | CKB | SCN2A | 14 | 2 | -1 | 1 | 2 | 39 | 27 | 0.53 | 103986004 | 166150541 | tier3 | 3UTR-5UTR | 3749 | NA | 0.35477 |
| LGG | TCGA-TQ-A7RH-01A | TCGA-TQ-A7RH | CNOT2|SLCO1A2 | CNOT2 | SLCO1A2 | 12 | 12 | 1 | -1 | 3 | 1 | 1 | 0.031 | 70672054 | 21445270 | tier3 | In-frame | 3934 | NA | 0.35368 |
| LGG | TCGA-KT-A7W1-01A | TCGA-KT-A7W1 | CNST|RAP1GAP | CNST | RAP1GAP | 1 | 1 | 1 | -1 | 17 | 12 | 11 | 0.18 | 246729965 | 21952890 | tier1 | 5UTR-5UTR | 3945 | NA | 0.36098 |
| LGG | TCGA-HT-8108-01A | TCGA-HT-8108 | CNST|RGS7 | CNST | RGS7 | 1 | 1 | 1 | -1 | 16 | 8 | 7 | 1.6 | 246811339 | 240990472 | tier1 | In-frame | 3946 | NA | 0.36703 |
| LGG | TCGA-HT-8106-01A | TCGA-HT-8106 | COLEC12|CLUL1 | COLEC12 | CLUL1 | 18 | 18 | -1 | 1 | 6 | 9 | 7 | 3 | 357400 | 606978 | tier1 | CDS-5UTR | 4050 | NA | 0.34467 |
| LGG | TCGA-HT-A619-01A | TCGA-HT-A619 | COQ6|FLRT1 | COQ6 | FLRT1 | 14 | 11 | 1 | 1 | 18 | 9 | 8 | 0.3 | 74417198 | 63883691 | tier1 | CDS-5UTR | 4072 | NA | 0.35718 |
| LGG | TCGA-CS-4941-01A | TCGA-CS-4941 | CPSF6|PTPRB | CPSF6 | PTPRB | 12 | 12 | 1 | -1 | 1495 | 2404 | 2042 | 2.7 | 69633486 | 70975082 | tier1 | Out-of-frame | 4161 | NA | 0.37846 |
| LGG | TCGA-DU-8163-01A | TCGA-DU-8163 | CRB1|IGFN1 | CRB1 | IGFN1 | 1 | 1 | 1 | 1 | 22 | 7 | 4 | 1.1 | 197237612 | 201162375 | tier1 | CDS-5UTR | 4186 | NA | 0.36535 |
| LGG | TCGA-DU-5871-01A | TCGA-DU-5871 | CTTN|FOLR1 | CTTN | FOLR1 | 11 | 11 | 1 | 1 | 3 | 3 | 3 | 0.044 | 70244720 | 71903210 | tier1 | 5UTR-5UTR | 4415 | NA | 0.38056 |
| LGG | TCGA-HT-A619-01A | TCGA-HT-A619 | CYTH1|MACROD1 | CYTH1 | MACROD1 | 17 | 11 | -1 | -1 | 16 | 11 | 9 | 0.49 | 76694351 | 63782753 | tier1 | In-frame | 4512 | NA | 0.3717 |
| LGG | TCGA-FG-5965-02A | TCGA-FG-5965 | DCBLD1|AC068473.1 | DCBLD1 | AC068473.1 | 6 | 18 | 1 | -1 | 4 | 2 | 2 | 0.49 | 117865740 | 77420804 | tier1 | In-frame | 4592 | non-validated | 0.34052 |
| LGG | TCGA-CS-6665-01A | TCGA-CS-6665 | DCUN1D4|SGCB | DCUN1D4 | SGCB | 4 | 4 | 1 | -1 | 68 | 40 | 37 | 0.68 | 52709433 | 52899806 | tier1 | Out-of-frame | 4622 | non-validated | 0.34786 |
| LGG | TCGA-HT-7686-01A | TCGA-HT-7686 | DDX6|TSPAN18 | DDX6 | TSPAN18 | 11 | 11 | -1 | 1 | 5 | 2 | 2 | 0.056 | 118627880 | 44927958 | tier1 | CDS-5UTR | 4678 | NA | 0.36316 |
| LGG | TCGA-DH-A66B-01A | TCGA-DH-A66B | DENND1A|ASTN2 | DENND1A | ASTN2 | 9 | 9 | -1 | -1 | 28 | 11 | 10 | 0.07 | 126319849 | 119188367 | tier1 | Out-of-frame | 4690 | NA | 0.33597 |
| LGG | TCGA-TM-A7CF-01A | TCGA-TM-A7CF | DHX16|HLA-E | DHX16 | HLA-E | 6 | 6 | -1 | 1 | 8 | 13 | 9 | 0.007 | 30638187 | 30460181 | tier1 | Out-of-frame | 4792 | non-validated | 0.36454 |
| LGG | TCGA-FG-5963-01A | TCGA-FG-5963 | DMTF1|SEMA3D | DMTF1 | SEMA3D | 7 | 7 | 1 | -1 | 12 | 12 | 12 | 1 | 86800405 | 84702397 | tier1 | In-frame | 4913 | NA | 0.36815 |
| LGG | TCGA-S9-A6U8-01A | TCGA-S9-A6U8 | DNM1L|CAP2 | DNM1L | CAP2 | 12 | 6 | 1 | 1 | 3 | 1 | 1 | 1.9 | 32832399 | 17463227 | tier3 | In-frame | 4964 | NA | 0.37327 |
| LGG | TCGA-DB-A4XB-01A | TCGA-DB-A4XB | DNM2|PDE4A | DNM2 | PDE4A | 19 | 19 | 1 | 1 | 12 | 6 | 6 | 0.079 | 10829079 | 10556894 | tier1 | In-frame | 4978 | NA | 0.37789 |
| LGG | TCGA-FG-8191-01A | TCGA-FG-8191 | DSCAML1|KDELC2 | DSCAML1 | KDELC2 | 11 | 11 | -1 | -1 | 6 | 3 | 3 | 1.1 | 117647506 | 108345679 | tier1 | Out-of-frame | 5116 | NA | 0.36068 |
| LGG | TCGA-HT-8015-01B | TCGA-HT-8015 | DSCAML1|MPZL2 | DSCAML1 | MPZL2 | 11 | 11 | -1 | -1 | 3 | 6 | 5 | 2.2 | 117647506 | 118133812 | tier1 | In-frame | 5117 | NA | 0.35752 |
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