Transcript Fusion
The transcript fusion data of TCGA were retrieved from the TumorFusions database.
List of the transcript fusions of the GESPs in each cancer type
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| Cancer Type | TCGA_barcode | Patient | Fusion_transcript | Gene_A | Gene_B | Chr_A | Chr_B | Strand_A | Strand_B | #_Discordant_Pairs | #_JSR | #_perfect_JSR | Evalue | Junction_A | Junction_B | Tier | Frame | TN | WGS_validation | Centrality |
| LGG | TCGA-HT-7475-01A | TCGA-HT-7475 | BOP1|NIPAL2 | BOP1 | NIPAL2 | 8 | 8 | -1 | -1 | 3 | 4 | 2 | 0.003 | 145514954 | 99234828 | tier2 | Out-of-frame | 2150 | NA | 0.35359 |
| LGG | TCGA-RY-A83Z-01A | TCGA-RY-A83Z | BRAP|KLRB1 | BRAP | KLRB1 | 12 | 12 | -1 | -1 | 19 | 13 | 13 | 0.57 | 112123515 | 9754195 | tier1 | In-frame | 2193 | NA | 0.36259 |
| LGG | TCGA-DU-5851-01A | TCGA-DU-5851 | BSG|ARFGEF2 | BSG | ARFGEF2 | 19 | 20 | 1 | 1 | 2 | 10 | 5 | 2.2 | 583492 | 47615777 | tier4 | 3UTR-CDS | 2245 | NA | 0.36917 |
| LGG | TCGA-HT-7475-01A | TCGA-HT-7475 | BTBD2|LINGO3 | BTBD2 | LINGO3 | 19 | 19 | -1 | -1 | 9 | 3 | 2 | 0.005 | 2015296 | 2291821 | tier1 | CDS-5UTR | 2264 | NA | 0.37273 |
| LGG | TCGA-FG-A4MT-01A | TCGA-FG-A4MT | C10orf112|C14orf126 | C10orf112 | C14orf126 | 10 | 14 | 1 | -1 | 3 | 1 | 1 | 0.45 | 19820280 | 31917660 | tier4 | Out-of-frame | 2304 | non-validated | 0 |
| LGG | TCGA-DU-7006-01A | TCGA-DU-7006 | C14orf37|KIAA0586 | C14orf37 | KIAA0586 | 14 | 14 | -1 | 1 | 205 | 114 | 105 | 0.35 | 58764673 | 58975273 | tier1 | 5UTR-CDS | 2459 | NA | 0 |
| LGG | TCGA-TM-A7CF-01A | TCGA-TM-A7CF | C19orf10|FAM187B | C19orf10 | FAM187B | 19 | 19 | -1 | -1 | 5 | 4 | 3 | 0.53 | 4659943 | 35716115 | tier1 | Out-of-frame | 2550 | non-validated | 0 |
| LGG | TCGA-DB-A64U-01A | TCGA-DB-A64U | C19orf24|PALM | C19orf24 | PALM | 19 | 19 | 1 | 1 | 16 | 5 | 4 | 0.008 | 1275829 | 726138 | tier1 | In-frame | 2570 | NA | 0 |
| LGG | TCGA-HT-8104-01A | TCGA-HT-8104 | CALM1|UTRN | CALM1 | UTRN | 14 | 6 | 1 | 1 | 2 | 1 | 1 | 0.54 | 90874605 | 144665237 | tier2 | NA | 2908 | non-validated | 0.38634 |
| LGG | TCGA-DU-5855-01A | TCGA-DU-5855 | CAMK2D|ANK2 | CAMK2D | ANK2 | 4 | 4 | -1 | 1 | 27 | 11 | 10 | 0.87 | 114436225 | 114179206 | tier1 | In-frame | 2922 | NA | 0.38162 |
| LGG | TCGA-HT-7854-01A | TCGA-HT-7854 | CD74|IQCE | CD74 | IQCE | 5 | 7 | -1 | 1 | 2 | 4 | 2 | 0.42 | 149781200 | 2641075 | tier3 | 3UTR-CDS | 3292 | NA | 0.3688 |
| LGG | TCGA-DB-5276-01A | TCGA-DB-5276 | CD74|UTRN | CD74 | UTRN | 5 | 6 | -1 | 1 | 2 | 6 | 2 | 0.22 | 149781200 | 144665237 | tier3 | NA | 3299 | NA | 0.37546 |
| LGG | TCGA-FG-5963-02A | TCGA-FG-5963 | CD81|SUPT16H | CD81 | SUPT16H | 11 | 14 | 1 | -1 | 2 | 16 | 13 | 3 | 2418627 | 21829491 | tier3 | 3UTR-CDS | 3304 | NA | 0.37711 |
| LGG | TCGA-HT-7873-01B | TCGA-HT-7873 | CDK5RAP2|GRIN1 | CDK5RAP2 | GRIN1 | 9 | 9 | -1 | 1 | 7 | 4 | 3 | 1.1 | 123280705 | 140036465 | tier1 | In-frame | 3430 | NA | 0.37407 |
| LGG | TCGA-E1-A7Z2-01A | TCGA-E1-A7Z2 | CDK5RAP2|MEGF9 | CDK5RAP2 | MEGF9 | 9 | 9 | -1 | -1 | 3 | 4 | 3 | 0.4 | 123330599 | 123367919 | tier1 | Out-of-frame | 3431 | NA | 0.36095 |
| LGG | TCGA-DU-A7T6-01A | TCGA-DU-A7T6 | CEP164|BACE1 | CEP164 | BACE1 | 11 | 11 | 1 | -1 | 8 | 3 | 2 | 2 | 117206396 | 117166063 | tier1 | 5UTR-CDS | 3537 | NA | 0.36804 |
| LGG | TCGA-HT-A61C-01A | TCGA-HT-A61C | CFTR|ASZ1 | CFTR | ASZ1 | 7 | 7 | 1 | -1 | 8 | 4 | 4 | 1.4 | 117251862 | 117066989 | tier1 | Out-of-frame | 3595 | NA | 0.3742 |
| LGG | TCGA-HT-A61C-01A | TCGA-HT-A61C | CFTR|WNT2 | CFTR | WNT2 | 7 | 7 | 1 | -1 | 2 | 1 | 1 | 0.63 | 117251862 | 116960847 | tier3 | Out-of-frame | 3596 | NA | 0.37348 |
| LGG | TCGA-TM-A7CF-01A | TCGA-TM-A7CF | CHERP|RHAG | CHERP | RHAG | 19 | 6 | -1 | -1 | 7 | 8 | 8 | 3.4 | 16652681 | 49587075 | tier1 | In-frame | 3663 | non-validated | 0.36537 |
| LGG | TCGA-S9-A6U0-01A | TCGA-S9-A6U0 | CHI3L1|UTRN | CHI3L1 | UTRN | 1 | 6 | -1 | 1 | 2 | 17 | 17 | 0.79 | 203148059 | 144665237 | tier3 | NA | 3676 | NA | 0.37118 |
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