Transcript Fusion
The transcript fusion data of TCGA were retrieved from the TumorFusions database.
List of the transcript fusions of the GESPs in each cancer type
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| Cancer Type | TCGA_barcode | Patient | Fusion_transcript | Gene_A | Gene_B | Chr_A | Chr_B | Strand_A | Strand_B | #_Discordant_Pairs | #_JSR | #_perfect_JSR | Evalue | Junction_A | Junction_B | Tier | Frame | TN | WGS_validation | Centrality |
| LGG | TCGA-HT-7606-01A | TCGA-HT-7606 | ADD1|ATP2B4 | ADD1 | ATP2B4 | 4 | 1 | 1 | 1 | 2 | 2 | 1 | 0.44 | 2931789 | 203671172 | tier3 | 3UTR-CDS | 493 | NA | 0.37758 |
| LGG | TCGA-CS-5393-01A | TCGA-CS-5393 | ADNP2|PARD6G | ADNP2 | PARD6G | 18 | 18 | 1 | -1 | 2 | 1 | 1 | 0.74 | 77867356 | 77960815 | tier3 | 5UTR-CDS | 536 | NA | 0.37562 |
| LGG | TCGA-HT-7680-01A | TCGA-HT-7680 | AFAP1|NTRK2 | AFAP1 | NTRK2 | 4 | 9 | -1 | 1 | 115 | 54 | 51 | 0.015 | 7780489 | 87356807 | tier1 | In-frame | 574 | NA | 0.38692 |
| LGG | TCGA-DB-5277-01A | TCGA-DB-5277 | AKAP13|NTRK3 | AKAP13 | NTRK3 | 15 | 15 | 1 | -1 | 5 | 2 | 2 | 0.78 | 86213061 | 88576276 | tier1 | In-frame | 733 | NA | 0.39386 |
| LGG | TCGA-CS-6669-01A | TCGA-CS-6669 | ALDOA|SCN2A | ALDOA | SCN2A | 16 | 2 | 1 | 1 | 2 | 23 | 15 | 0.22 | 30081734 | 166150541 | tier3 | 3UTR-5UTR | 821 | NA | 0.35794 |
| LGG | TCGA-DU-5870-01A | TCGA-DU-5870 | ALDOA|SLC1A3 | ALDOA | SLC1A3 | 16 | 5 | 1 | 1 | 2 | 1 | 1 | 1.3 | 30081734 | 36606541 | tier3 | NA | 824 | non-validated | 0.35725 |
| LGG | TCGA-HT-8104-01A | TCGA-HT-8104 | ANK2|ALPK1 | ANK2 | ALPK1 | 4 | 4 | 1 | 1 | 6 | 16 | 14 | 0.79 | 113825670 | 113350305 | tier1 | In-frame | 899 | validated | 0.37169 |
| LGG | TCGA-DB-A75P-01A | TCGA-DB-A75P | ANK2|ARHGAP31 | ANK2 | ARHGAP31 | 4 | 3 | 1 | 1 | 2 | 1 | 1 | 0.39 | 114304891 | 119013220 | tier3 | 3UTR-5UTR | 901 | NA | 0.36868 |
| LGG | TCGA-S9-A7R3-01A | TCGA-S9-A7R3 | ANO6|HNRNPUL1 | ANO6 | HNRNPUL1 | 12 | 19 | 1 | 1 | 21 | 16 | 16 | 0.26 | 45610174 | 41774128 | tier1 | In-frame | 1034 | NA | 0.36808 |
| LGG | TCGA-HT-7610-01A | TCGA-HT-7610 | APP|EEA1 | APP | EEA1 | 21 | 12 | -1 | -1 | 2 | 1 | 1 | 0.1 | 27252862 | 93229203 | tier3 | NA | 1150 | NA | 0.38497 |
| LGG | TCGA-HT-A5RC-01A | TCGA-HT-A5RC | AQP1|CHI3L2 | AQP1 | CHI3L2 | 7 | 1 | 1 | 1 | 2 | 35 | 26 | 0.74 | 30965131 | 111772314 | tier3 | 3UTR-5UTR | 1167 | NA | 0.36268 |
| LGG | TCGA-E1-5303-01A | TCGA-E1-5303 | ARMC8|CLDN18 | ARMC8 | CLDN18 | 3 | 3 | 1 | 1 | 5 | 9 | 7 | 0.6 | 137906441 | 137742500 | tier1 | 5UTR-CDS | 1418 | NA | 0.34765 |
| LGG | TCGA-E1-5304-01A | TCGA-E1-5304 | ASCC3|SERINC1 | ASCC3 | SERINC1 | 6 | 6 | -1 | -1 | 3 | 6 | 4 | 0.023 | 101163338 | 122768149 | tier1 | Out-of-frame | 1509 | NA | 0.35696 |
| LGG | TCGA-DU-A6S7-01A | TCGA-DU-A6S7 | ASTN2|TMEM38B | ASTN2 | TMEM38B | 9 | 9 | -1 | 1 | 2 | 2 | 2 | 2.3 | 119858323 | 108467878 | tier3 | In-frame | 1550 | NA | 0.338 |
| LGG | TCGA-DU-7010-01A | TCGA-DU-7010 | ATG4C|INADL | ATG4C | INADL | 1 | 1 | 1 | 1 | 13 | 6 | 6 | 0.074 | 63249944 | 62545122 | tier1 | 5UTR-CDS | 1626 | NA | 0.37462 |
| LGG | TCGA-E1-A7Z2-01A | TCGA-E1-A7Z2 | ATP2C2|ZNF423 | ATP2C2 | ZNF423 | 16 | 16 | 1 | -1 | 2 | 1 | 1 | 0.049 | 84402320 | 49823457 | tier2 | Out-of-frame | 1734 | NA | 0.36365 |
| LGG | TCGA-DU-A5TY-01A | TCGA-DU-A5TY | AUTS2|TBC1D30 | AUTS2 | TBC1D30 | 7 | 12 | 1 | 1 | 7 | 6 | 5 | 0.13 | 69599557 | 65221615 | tier1 | CDS-5UTR | 1827 | NA | 0.33912 |
| LGG | TCGA-DU-A7TA-01A | TCGA-DU-A7TA | AZIN1|ITPR1 | AZIN1 | ITPR1 | 8 | 3 | -1 | 1 | 4 | 3 | 2 | 1.7 | 103870241 | 4669447 | tier1 | 5UTR-CDS | 1843 | NA | 0.37293 |
| LGG | TCGA-HW-A5KK-01A | TCGA-HW-A5KK | BAI1|EXT1 | BAI1 | EXT1 | 8 | 8 | 1 | -1 | 11 | 3 | 3 | 0.53 | 143592434 | 118834836 | tier1 | In-frame | 1911 | NA | 0.3686 |
| LGG | TCGA-P5-A733-01A | TCGA-P5-A733 | BBX|DGKG | BBX | DGKG | 3 | 3 | 1 | -1 | 3 | 2 | 2 | 0.53 | 107245245 | 186038496 | tier1 | 5UTR-5UTR | 1956 | NA | 0.34592 |
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