Transcript Fusion
The transcript fusion data of TCGA were retrieved from the TumorFusions database.
List of the transcript fusions of the GESPs in each cancer type
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| Cancer Type | TCGA_barcode | Patient | Fusion_transcript | Gene_A | Gene_B | Chr_A | Chr_B | Strand_A | Strand_B | #_Discordant_Pairs | #_JSR | #_perfect_JSR | Evalue | Junction_A | Junction_B | Tier | Frame | TN | WGS_validation | Centrality |
| LAML | TCGA-AB-2994-03A | TCGA-AB-2994 | MPO|ANXA1 | MPO | ANXA1 | 17 | 9 | -1 | 1 | 2 | 37 | 23 | 3.2 | 56347217 | 75772570 | tier3 | 3UTR-5UTR | 10602 | non-validated | 0.37556 |
| LAML | TCGA-AB-2943-03A | TCGA-AB-2943 | MYH9|CACNA1C | MYH9 | CACNA1C | 22 | 12 | -1 | 1 | 2 | 7 | 6 | 0.081 | 36783852 | 2224390 | tier3 | 5UTR-CDS | 10896 | NA | 0.38128 |
| LAML | TCGA-AB-2848-03A | TCGA-AB-2848 | NCOR2|SCARB1 | NCOR2 | SCARB1 | 12 | 12 | -1 | -1 | 34 | 9 | 7 | 0.08 | 124968142 | 125263132 | tier1 | In-frame | 11255 | NA | 0.37966 |
| LAML | TCGA-AB-2849-03A | TCGA-AB-2849 | PICALM|MLLT10 | PICALM | MLLT10 | 11 | 10 | -1 | 1 | 15 | 19 | 11 | 0.66 | 85685751 | 21940602 | tier1 | In-frame | 12800 | NA | 0.36396 |
| LAML | TCGA-AB-2855-03A | TCGA-AB-2855 | PICALM|MLLT10 | PICALM | MLLT10 | 11 | 10 | -1 | 1 | 33 | 13 | 13 | 0.66 | 85685751 | 21940602 | tier1 | In-frame | 12801 | NA | 0.36396 |
| LAML | TCGA-AB-3007-03A | TCGA-AB-3007 | PLAUR|MARK4 | PLAUR | MARK4 | 19 | 19 | -1 | 1 | 3 | 1 | 1 | 0.022 | 44174218 | 45762247 | tier3 | Out-of-frame | 12949 | non-validated | 0.38962 |
| LAML | TCGA-AB-2857-03A | TCGA-AB-2857 | PTPRJ|C2CD2L | PTPRJ | C2CD2L | 11 | 11 | 1 | 1 | 2 | 1 | 1 | 0.031 | 48002560 | 118980814 | tier3 | In-frame | 13868 | NA | 0.37847 |
| LAML | TCGA-AB-2912-03A | TCGA-AB-2912 | RPS11|FLT3LG | RPS11 | FLT3LG | 19 | 19 | 1 | 1 | 134 | 95 | 81 | 100 | 50001303 | 49977860 | tier1 | CDS-5UTR | 15033 | NA | 0 |
| LAML | TCGA-AB-2811-03B | TCGA-AB-2811 | TTYH3|MAD1L1 | TTYH3 | MAD1L1 | 7 | 7 | 1 | -1 | 2 | 2 | 2 | 0.15 | 2671912 | 1938026 | tier4 | Out-of-frame | 18921 | NA | 0 |
| LGG | TCGA-E1-5304-01A | TCGA-E1-5304 | ABCA2|TRIM14 | ABCA2 | TRIM14 | 9 | 9 | -1 | -1 | 25 | 24 | 19 | 1.3 | 139922527 | 100862446 | tier1 | In-frame | 41 | NA | 0.36054 |
| LGG | TCGA-TM-A84I-01A | TCGA-TM-A84I | ABCA3|XRCC6BP1 | ABCA3 | XRCC6BP1 | 16 | 12 | -1 | 1 | 2 | 2 | 2 | 0.99 | 2358451 | 58340778 | tier2 | Out-of-frame | 42 | NA | 0.35636 |
| LGG | TCGA-TQ-A7RV-01A | TCGA-TQ-A7RV | ABI1|PTP4A3 | ABI1 | PTP4A3 | 10 | 8 | -1 | 1 | 11 | 8 | 5 | 0.86 | 27112067 | 142431488 | tier1 | CDS-5UTR | 100 | non-validated | 0.37364 |
| LGG | TCGA-HT-8011-01A | TCGA-HT-8011 | ADAM10|ZNF770 | ADAM10 | ZNF770 | 15 | 15 | -1 | -1 | 3 | 3 | 2 | 0.023 | 59041679 | 35279874 | tier1 | CDS-5UTR | 406 | NA | 0.37617 |
| LGG | TCGA-DB-A64L-01A | TCGA-DB-A64L | ADCY9|NMRAL1 | ADCY9 | NMRAL1 | 16 | 16 | -1 | -1 | 5 | 1 | 1 | 1.3 | 4163751 | 4519466 | tier2 | In-frame | 478 | NA | 0.34687 |
| LGG | TCGA-TM-A84I-01A | TCGA-TM-A84I | ADCY9|RASSF8 | ADCY9 | RASSF8 | 16 | 12 | -1 | 1 | 16 | 19 | 17 | 5.3 | 4163751 | 26231966 | tier2 | In-frame | 482 | NA | 0.36683 |
| LGG | TCGA-TM-A84I-01A | TCGA-TM-A84I | ADCY9|TEAD4 | ADCY9 | TEAD4 | 16 | 12 | -1 | 1 | 186 | 144 | 131 | 0.038 | 4163751 | 3103904 | tier2 | NA | 486 | NA | 0.36166 |
| LGG | TCGA-KT-A7W1-01A | TCGA-KT-A7W1 | ADCY9|VASN | ADCY9 | VASN | 16 | 16 | -1 | 1 | 4 | 3 | 3 | 0.063 | 4163751 | 4430870 | tier1 | CDS-5UTR | 488 | NA | 0.36039 |
| LGG | TCGA-TM-A84B-01A | TCGA-TM-A84B | ADCYAP1R1|AQP1 | ADCYAP1R1 | AQP1 | 7 | 7 | 1 | 1 | 255 | 371 | 351 | 0.052 | 31092293 | 30961681 | tier1 | 5UTR-CDS | 489 | NA | 0.37229 |
| LGG | TCGA-DU-A5TY-01A | TCGA-DU-A5TY | ADCYAP1R1|DFNA5 | ADCYAP1R1 | DFNA5 | 7 | 7 | 1 | -1 | 24 | 20 | 18 | 0.053 | 31132349 | 24750007 | tier1 | Out-of-frame | 490 | NA | 0.36883 |
| LGG | TCGA-QH-A6CZ-01A | TCGA-QH-A6CZ | ADCYAP1R1|TYK2 | ADCYAP1R1 | TYK2 | 7 | 19 | 1 | -1 | 2 | 7 | 7 | 0.083 | 31151089 | 10491352 | tier3 | 3UTR-5UTR | 491 | NA | 0.38114 |
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