Transcript Fusion
The transcript fusion data of TCGA were retrieved from the TumorFusions database.
List of the transcript fusions of the GESPs in each cancer type
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| Cancer Type | TCGA_barcode | Patient | Fusion_transcript | Gene_A | Gene_B | Chr_A | Chr_B | Strand_A | Strand_B | #_Discordant_Pairs | #_JSR | #_perfect_JSR | Evalue | Junction_A | Junction_B | Tier | Frame | TN | WGS_validation | Centrality |
| KIRP | TCGA-BQ-7056-01A | TCGA-BQ-7056 | TNFRSF10B|LOXL2 | TNFRSF10B | LOXL2 | 8 | 8 | -1 | -1 | 7 | 3 | 3 | 0.52 | 22926264 | 23225947 | tier1 | CDS-5UTR | 18335 | NA | 0 |
| KIRP | TCGA-P4-A5EB-01A | TCGA-P4-A5EB | TNRC6B|BASP1 | TNRC6B | BASP1 | 22 | 5 | 1 | 1 | 11 | 4 | 4 | 1.2 | 40552186 | 17275317 | tier1 | CDS-5UTR | 18389 | NA | 0 |
| KIRP | TCGA-DW-7839-01A | TCGA-DW-7839 | TOB1|UTRN | TOB1 | UTRN | 17 | 6 | -1 | 1 | 2 | 3 | 3 | 0.08 | 48939584 | 144665237 | tier3 | NA | 18422 | NA | 0 |
| KIRP | TCGA-G7-6793-01A | TCGA-G7-6793 | TPRA1|LPP | TPRA1 | LPP | 3 | 3 | -1 | 1 | 7 | 3 | 3 | 0.36 | 127298583 | 188583988 | tier1 | In-frame | 18495 | NA | 0 |
| KIRP | TCGA-B1-7332-01A | TCGA-B1-7332 | TRPM4|PPFIA3 | TRPM4 | PPFIA3 | 19 | 19 | 1 | 1 | 3 | 5 | 4 | 0.056 | 49675365 | 49636258 | tier1 | Out-of-frame | 18727 | NA | 0 |
| KIRP | TCGA-G7-A8LD-01A | TCGA-G7-A8LD | TSPAN4|TALDO1 | TSPAN4 | TALDO1 | 11 | 11 | 1 | 1 | 111 | 94 | 86 | 0.24 | 847300 | 755879 | tier4 | 5UTR-CDS | 18800 | NA | 0 |
| KIRP | TCGA-G7-6792-01A | TCGA-G7-6792 | TSSC1|SLC5A6 | TSSC1 | SLC5A6 | 2 | 2 | -1 | -1 | 3 | 2 | 1 | 0.72 | 3341788 | 27434401 | tier2 | CDS-5UTR | 18822 | NA | 0 |
| KIRP | TCGA-G7-6793-01A | TCGA-G7-6793 | TTC7B|RPS6KA5 | TTC7B | RPS6KA5 | 14 | 14 | -1 | -1 | 6 | 4 | 2 | 0.52 | 91161844 | 91372643 | tier1 | Out-of-frame | 18891 | NA | 0 |
| KIRP | TCGA-B9-4116-01A | TCGA-B9-4116 | ZC3HC1|ADAM22 | ZC3HC1 | ADAM22 | 7 | 7 | -1 | 1 | 14 | 7 | 7 | 8 | 129691061 | 87704941 | tier1 | In-frame | 20160 | validated | 0 |
| KIRP | TCGA-F9-A7Q0-01A | TCGA-F9-A7Q0 | ZFP106|GPR115 | ZFP106 | GPR115 | 15 | 6 | -1 | 1 | 81 | 64 | 64 | 4.1 | 42713259 | 47688945 | tier1 | CDS-3UTR | 20265 | NA | 0 |
| LAML | TCGA-AB-2846-03A | TCGA-AB-2846 | ABCC6|C16orf70 | ABCC6 | C16orf70 | 16 | 16 | -1 | 1 | 2 | 1 | 1 | 0.52 | 16253339 | 67165189 | tier2 | In-frame | 70 | NA | 0 |
| LAML | TCGA-AB-2835-03A | TCGA-AB-2835 | AHNAK|TYK2 | AHNAK | TYK2 | 11 | 19 | -1 | -1 | 2 | 27 | 18 | 0.84 | 62283375 | 10491352 | tier3 | 3UTR-5UTR | 696 | NA | 0.37587 |
| LAML | TCGA-AB-2920-03B | TCGA-AB-2920 | CHST11|ATP1B4 | CHST11 | ATP1B4 | 12 | X | 1 | 1 | 17 | 14 | 13 | 0.23 | 104995769 | 119500380 | tier1 | In-frame | 3708 | NA | 0.33574 |
| LAML | TCGA-AB-2915-03A | TCGA-AB-2915 | DPM1|GRID1 | DPM1 | GRID1 | 20 | 10 | -1 | -1 | 13 | 9 | 9 | 0.24 | 49571723 | 87675996 | tier1 | In-frame | 5077 | NA | 0.35728 |
| LAML | TCGA-AB-2904-03A | TCGA-AB-2904 | GPR141|ONECUT1 | GPR141 | ONECUT1 | 7 | 15 | 1 | -1 | 2 | 2 | 2 | 0.094 | 37725186 | 53050044 | tier3 | NA | 7363 | NA | 0.36905 |
| LAML | TCGA-AB-2920-03B | TCGA-AB-2920 | KSR1|ODZ1 | KSR1 | ODZ1 | 17 | X | 1 | -1 | 7 | 4 | 4 | 0.24 | 25877734 | 123695667 | tier1 | 5UTR-CDS | 9164 | NA | 0.36775 |
| LAML | TCGA-AB-2826-03A | TCGA-AB-2826 | LYZ|ANXA1 | LYZ | ANXA1 | 12 | 9 | 1 | 1 | 2 | 24 | 13 | 1.5 | 69748014 | 75772570 | tier3 | 3UTR-5UTR | 9714 | NA | 0.37554 |
| LAML | TCGA-AB-2837-03A | TCGA-AB-2837 | LYZ|ANXA1 | LYZ | ANXA1 | 12 | 9 | 1 | 1 | 2 | 89 | 53 | 1.5 | 69748014 | 75772570 | tier3 | 3UTR-5UTR | 9715 | NA | 0.37554 |
| LAML | TCGA-AB-2849-03A | TCGA-AB-2849 | MLLT10|PICALM | MLLT10 | PICALM | 10 | 11 | 1 | -1 | 7 | 21 | 18 | 0.66 | 21906136 | 85670103 | tier1 | In-frame | 10508 | NA | 0.36396 |
| LAML | TCGA-AB-2855-03A | TCGA-AB-2855 | MLLT10|PICALM | MLLT10 | PICALM | 10 | 11 | 1 | -1 | 3 | 9 | 9 | 0.66 | 21906136 | 85670103 | tier1 | In-frame | 10509 | NA | 0.36396 |
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