Transcript Fusion
The transcript fusion data of TCGA were retrieved from the TumorFusions database.
List of the transcript fusions of the GESPs in each cancer type
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| Cancer Type | TCGA_barcode | Patient | Fusion_transcript | Gene_A | Gene_B | Chr_A | Chr_B | Strand_A | Strand_B | #_Discordant_Pairs | #_JSR | #_perfect_JSR | Evalue | Junction_A | Junction_B | Tier | Frame | TN | WGS_validation | Centrality |
| KIRP | TCGA-GL-7773-01A | TCGA-GL-7773 | MET|C8orf34 | MET | C8orf34 | 7 | 8 | 1 | 1 | 73 | 72 | 63 | 0.86 | 116412043 | 69358564 | tier1 | In-frame | 10254 | NA | 0 |
| KIRP | TCGA-B9-A5W9-01A | TCGA-B9-A5W9 | NDUFS4|TMPRSS2 | NDUFS4 | TMPRSS2 | 5 | 21 | 1 | -1 | 32 | 11 | 10 | 0.27 | 52954454 | 42838080 | tier1 | Out-of-frame | 11309 | NA | 0.35013 |
| KIRP | TCGA-SX-A71S-01A | TCGA-SX-A71S | NFAT5|CSMD2 | NFAT5 | CSMD2 | 16 | 1 | 1 | -1 | 47 | 47 | 44 | 0.16 | 69600277 | 34015950 | tier1 | In-frame | 11437 | NA | 0.36399 |
| KIRP | TCGA-BQ-7053-01A | TCGA-BQ-7053 | NOTCH1|HNF1B | NOTCH1 | HNF1B | 9 | 17 | -1 | -1 | 279 | 205 | 180 | 3.5 | 139397634 | 36093736 | tier1 | In-frame | 11660 | NA | 0.38462 |
| KIRP | TCGA-BQ-5878-01A | TCGA-BQ-5878 | PCBP1|UTRN | PCBP1 | UTRN | 2 | 6 | 1 | 1 | 2 | 2 | 2 | 2.7 | 70316332 | 144665237 | tier3 | NA | 12364 | NA | 0.372 |
| KIRP | TCGA-B9-A5W9-01A | TCGA-B9-A5W9 | PCBP3|GRIK1 | PCBP3 | GRIK1 | 21 | 21 | 1 | -1 | 3 | 1 | 1 | 0.28 | 47063782 | 30971257 | tier3 | 5UTR-CDS | 12371 | NA | 0.36357 |
| KIRP | TCGA-G7-6793-01A | TCGA-G7-6793 | PHC3|SLC7A14 | PHC3 | SLC7A14 | 3 | 3 | -1 | -1 | 8 | 5 | 4 | 0.26 | 169863211 | 170185165 | tier1 | Out-of-frame | 12696 | NA | 0.34948 |
| KIRP | TCGA-G7-6793-01A | TCGA-G7-6793 | PIK3CB|HHLA2 | PIK3CB | HHLA2 | 3 | 3 | -1 | 1 | 93 | 72 | 64 | 1.5 | 138478015 | 108070635 | tier1 | CDS-5UTR | 12837 | NA | 0.37703 |
| KIRP | TCGA-G7-6793-01A | TCGA-G7-6793 | PIK3CB|SEMA5B | PIK3CB | SEMA5B | 3 | 3 | -1 | -1 | 32 | 26 | 26 | 0.23 | 138452203 | 122667556 | tier4 | Out-of-frame | 12841 | NA | 0.3781 |
| KIRP | TCGA-G7-6793-01A | TCGA-G7-6793 | PITPNA|SLC43A2 | PITPNA | SLC43A2 | 17 | 17 | -1 | -1 | 8 | 4 | 3 | 0.003 | 1442163 | 1520063 | tier1 | Out-of-frame | 12887 | NA | 0.36502 |
| KIRP | TCGA-BQ-5890-01A | TCGA-BQ-5890 | PKMYT1|CLDN6 | PKMYT1 | CLDN6 | 16 | 16 | -1 | -1 | 21 | 15 | 15 | 1.7 | 3026665 | 3066043 | tier1 | CDS-5UTR | 12920 | NA | 0.37912 |
| KIRP | TCGA-P4-A5EB-01A | TCGA-P4-A5EB | PLXNB2|MAST4 | PLXNB2 | MAST4 | 22 | 5 | -1 | 1 | 20 | 20 | 20 | 0.2 | 50722031 | 66195779 | tier1 | Out-of-frame | 13072 | NA | 0.37334 |
| KIRP | TCGA-BQ-7049-01A | TCGA-BQ-7049 | S100A6|CD40 | S100A6 | CD40 | 1 | 20 | -1 | 1 | 2 | 66 | 44 | 0.49 | 153507075 | 44754189 | tier4 | NA | 15235 | NA | 0 |
| KIRP | TCGA-G7-6793-01A | TCGA-G7-6793 | SEMA5B|PLS1 | SEMA5B | PLS1 | 3 | 3 | -1 | 1 | 37 | 29 | 27 | 2.3 | 122667353 | 142422710 | tier1 | Out-of-frame | 15567 | NA | 0 |
| KIRP | TCGA-BQ-5891-01A | TCGA-BQ-5891 | SLC22A4|PDLIM4 | SLC22A4 | PDLIM4 | 5 | 5 | 1 | 1 | 47 | 47 | 40 | 0.18 | 131630702 | 131598302 | tier1 | In-frame | 16077 | NA | 0 |
| KIRP | TCGA-GL-A4EM-01A | TCGA-GL-A4EM | SLC47A2|ALDH3A1 | SLC47A2 | ALDH3A1 | 17 | 17 | -1 | -1 | 31 | 27 | 23 | 1.9 | 19616016 | 19645525 | tier1 | In-frame | 16265 | NA | 0 |
| KIRP | TCGA-BQ-5880-01A | TCGA-BQ-5880 | SLC47A2|ULK2 | SLC47A2 | ULK2 | 17 | 17 | -1 | -1 | 11 | 6 | 5 | 5.6 | 19619746 | 19674380 | tier1 | CDS-3UTR | 16269 | NA | 0 |
| KIRP | TCGA-DZ-6131-01A | TCGA-DZ-6131 | ST6GAL1|LPP | ST6GAL1 | LPP | 3 | 3 | 1 | 1 | 28 | 15 | 13 | 0.87 | 186681714 | 188583988 | tier1 | 5UTR-CDS | 16948 | NA | 0 |
| KIRP | TCGA-G7-6792-01A | TCGA-G7-6792 | STRN|ALK | STRN | ALK | 2 | 2 | -1 | -1 | 48 | 55 | 48 | 0.52 | 37143221 | 29446394 | tier1 | In-frame | 17108 | NA | 0 |
| KIRP | TCGA-G7-6793-01A | TCGA-G7-6793 | TMEM117|MCCC1 | TMEM117 | MCCC1 | 12 | 3 | 1 | -1 | 18 | 7 | 6 | 0.27 | 44693522 | 182740342 | tier1 | In-frame | 17937 | NA | 0 |
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