Transcript Fusion
The transcript fusion data of TCGA were retrieved from the TumorFusions database.
List of the transcript fusions of the GESPs in each cancer type
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| Cancer Type | TCGA_barcode | Patient | Fusion_transcript | Gene_A | Gene_B | Chr_A | Chr_B | Strand_A | Strand_B | #_Discordant_Pairs | #_JSR | #_perfect_JSR | Evalue | Junction_A | Junction_B | Tier | Frame | TN | WGS_validation | Centrality |
| KIRP | TCGA-DW-7839-01A | TCGA-DW-7839 | FGFR3|TACC3 | FGFR3 | TACC3 | 4 | 4 | 1 | 1 | 4 | 2 | 2 | 0.12 | 1808661 | 1741429 | tier1 | In-frame | 6500 | NA | 0.38077 |
| KIRP | TCGA-G7-6793-01A | TCGA-G7-6793 | FLNA|ATP5G3 | FLNA | ATP5G3 | X | 2 | -1 | -1 | 2 | 1 | 1 | 0.48 | 153576900 | 176049335 | tier3 | 3UTR-5UTR | 6560 | NA | 0.37811 |
| KIRP | TCGA-DW-7836-01A | TCGA-DW-7836 | GNAS|AP1G2 | GNAS | AP1G2 | 20 | 14 | 1 | -1 | 2 | 98 | 57 | 0.036 | 57486247 | 24037279 | tier3 | 3UTR-5UTR | 7180 | NA | 0.37565 |
| KIRP | TCGA-GL-6846-01A | TCGA-GL-6846 | GPI|UTRN | GPI | UTRN | 19 | 6 | 1 | 1 | 2 | 12 | 12 | 0.58 | 34893318 | 144665237 | tier3 | NA | 7341 | NA | 0.37097 |
| KIRP | TCGA-J7-8537-01A | TCGA-J7-8537 | GSR|CSMD1 | GSR | CSMD1 | 8 | 8 | -1 | -1 | 74 | 79 | 76 | 0.11 | 30541605 | 2887035 | tier1 | In-frame | 7503 | NA | 0.35155 |
| KIRP | TCGA-BQ-7053-01A | TCGA-BQ-7053 | HNF1B|NOTCH1 | HNF1B | NOTCH1 | 17 | 9 | -1 | -1 | 1056 | 691 | 605 | 0.99 | 36099431 | 139396940 | tier1 | In-frame | 7879 | NA | 0.38462 |
| KIRP | TCGA-5P-A9K4-01A | TCGA-5P-A9K4 | IQGAP1|ZNF774 | IQGAP1 | ZNF774 | 15 | 15 | 1 | 1 | 4 | 5 | 4 | 2.3 | 90934105 | 90897874 | tier1 | CDS-5UTR | 8324 | NA | 0.38786 |
| KIRP | TCGA-P4-A5EB-01A | TCGA-P4-A5EB | ITGA2|MYO18B | ITGA2 | MYO18B | 5 | 22 | 1 | 1 | 8 | 6 | 6 | 0.69 | 52353931 | 26388329 | tier1 | In-frame | 8374 | NA | 0.36972 |
| KIRP | TCGA-B9-A5W9-01A | TCGA-B9-A5W9 | ITGA2|RNF180 | ITGA2 | RNF180 | 5 | 5 | 1 | 1 | 17 | 5 | 3 | 1.4 | 52285362 | 63621013 | tier2 | Out-of-frame | 8376 | NA | 0.36729 |
| KIRP | TCGA-G7-6793-01A | TCGA-G7-6793 | ITGA3|EIF2AK2 | ITGA3 | EIF2AK2 | 17 | 2 | 1 | -1 | 2 | 4 | 3 | 0.5 | 48167848 | 37342384 | tier4 | NA | 8378 | NA | 0.38699 |
| KIRP | TCGA-HE-7129-01A | TCGA-HE-7129 | ITM2B|PHF15 | ITM2B | PHF15 | 13 | 5 | 1 | 1 | 2 | 10 | 3 | 1.5 | 48835524 | 133861347 | tier4 | 3UTR-5UTR | 8423 | NA | 0.3596 |
| KIRP | TCGA-A4-A5Y1-01A | TCGA-A4-A5Y1 | ITM2B|RPL30 | ITM2B | RPL30 | 13 | 8 | 1 | -1 | 2 | 9 | 9 | 0.91 | 48835524 | 99058697 | tier2 | NA | 8424 | NA | 0.36477 |
| KIRP | TCGA-HE-A5NH-01A | TCGA-HE-A5NH | ITM2B|RPL30 | ITM2B | RPL30 | 13 | 8 | 1 | -1 | 2 | 22 | 8 | 0.91 | 48835524 | 99058697 | tier3 | NA | 8426 | NA | 0.36477 |
| KIRP | TCGA-B9-A69E-01A | TCGA-B9-A69E | KCNK5|RUNX2 | KCNK5 | RUNX2 | 6 | 6 | -1 | 1 | 2 | 2 | 2 | 0.018 | 39161945 | 45479983 | tier2 | In-frame | 8581 | NA | 0.37462 |
| KIRP | TCGA-G7-6792-01A | TCGA-G7-6792 | KDM3A|CRIM1 | KDM3A | CRIM1 | 2 | 2 | 1 | 1 | 43 | 26 | 23 | 0.3 | 86691339 | 36691677 | tier1 | In-frame | 8653 | NA | 0.34546 |
| KIRP | TCGA-J7-8537-01A | TCGA-J7-8537 | KIAA0319L|UBA6 | KIAA0319L | UBA6 | 1 | 4 | -1 | -1 | 55 | 42 | 40 | 1.1 | 35972213 | 68534392 | tier1 | In-frame | 8778 | NA | 0.35095 |
| KIRP | TCGA-G7-6793-01A | TCGA-G7-6793 | LMAN2|DBN1 | LMAN2 | DBN1 | 5 | 5 | -1 | -1 | 15 | 18 | 18 | 0.68 | 176761285 | 176895221 | tier1 | In-frame | 9375 | NA | 0.36728 |
| KIRP | TCGA-P4-AAVM-01A | TCGA-P4-AAVM | LTBR|PRSS3 | LTBR | PRSS3 | 12 | 9 | 1 | 1 | 145 | 184 | 159 | 0.93 | 6495610 | 33796641 | tier1 | In-frame | 9659 | NA | 0.37245 |
| KIRP | TCGA-BQ-5877-01A | TCGA-BQ-5877 | MAP4|CHD1 | MAP4 | CHD1 | 3 | 5 | -1 | -1 | 2 | 2 | 1 | 0.15 | 47892186 | 98219587 | tier4 | NA | 9885 | NA | 0.372 |
| KIRP | TCGA-P4-A5EB-01A | TCGA-P4-A5EB | MAPK12|SSTR3 | MAPK12 | SSTR3 | 22 | 22 | -1 | -1 | 7 | 4 | 4 | 0.08 | 50693626 | 37603878 | tier1 | CDS-5UTR | 9939 | NA | 0.38815 |
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