Transcript Fusion
The transcript fusion data of TCGA were retrieved from the TumorFusions database.
List of the transcript fusions of the GESPs in each cancer type
| Showing page 123 |
first page | previous page | next page | last page |
| Cancer Type | TCGA_barcode | Patient | Fusion_transcript | Gene_A | Gene_B | Chr_A | Chr_B | Strand_A | Strand_B | #_Discordant_Pairs | #_JSR | #_perfect_JSR | Evalue | Junction_A | Junction_B | Tier | Frame | TN | WGS_validation | Centrality |
| KIRC | TCGA-B0-5081-01A | TCGA-B0-5081 | ZNF277|CEACAM19 | ZNF277 | CEACAM19 | 7 | 19 | 1 | 1 | 36 | 18 | 16 | 2.2 | 111846862 | 45175868 | tier1 | In-frame | 20433 | NA | 0 |
| KIRP | TCGA-B9-A44B-01A | TCGA-B9-A44B | ABCA7|COL5A3 | ABCA7 | COL5A3 | 19 | 19 | 1 | -1 | 46 | 38 | 9 | 0.12 | 1059084 | 10114821 | tier1 | In-frame | 46 | non-validated | 0.36765 |
| KIRP | TCGA-B9-4116-01A | TCGA-B9-4116 | ADAM22|ASB4 | ADAM22 | ASB4 | 7 | 7 | 1 | 1 | 2 | 4 | 3 | 0.1 | 87754974 | 95166883 | tier2 | In-frame | 413 | validated | 0.37049 |
| KIRP | TCGA-P4-A5EB-01A | TCGA-P4-A5EB | ADSL|CDH18 | ADSL | CDH18 | 22 | 5 | 1 | -1 | 8 | 8 | 7 | 0.25 | 40757346 | 19981287 | tier1 | CDS-5UTR | 550 | NA | 0.35462 |
| KIRP | TCGA-EV-5902-01A | TCGA-EV-5902 | AGRN|SIAE | AGRN | SIAE | 1 | 11 | 1 | -1 | 2 | 8 | 8 | 1.5 | 991492 | 124543777 | tier3 | NA | 673 | NA | 0.34685 |
| KIRP | TCGA-BQ-7051-01A | TCGA-BQ-7051 | AQP1|ARFGEF2 | AQP1 | ARFGEF2 | 7 | 20 | 1 | 1 | 2 | 5 | 5 | 0.87 | 30965131 | 47615777 | tier3 | 3UTR-CDS | 1165 | NA | 0.36799 |
| KIRP | TCGA-2Z-A9JJ-01A | TCGA-2Z-A9JJ | C1QTNF3|CLPTM1L | C1QTNF3 | CLPTM1L | 5 | 5 | -1 | -1 | 12 | 8 | 8 | 1.1 | 34028859 | 1318568 | tier1 | Out-of-frame | 2627 | NA | 0.34626 |
| KIRP | TCGA-B9-A44B-01A | TCGA-B9-A44B | C7orf50|CD177 | C7orf50 | CD177 | 7 | 19 | -1 | 1 | 11 | 5 | 5 | 0.19 | 1166893 | 43858005 | tier1 | Out-of-frame | 2793 | non-validated | 0 |
| KIRP | TCGA-GL-7773-01A | TCGA-GL-7773 | C8orf34|MET | C8orf34 | MET | 8 | 7 | 1 | 1 | 66 | 59 | 51 | 0.86 | 69351881 | 116414935 | tier1 | In-frame | 2802 | NA | 0 |
| KIRP | TCGA-G7-6793-01A | TCGA-G7-6793 | CAPZA2|MET | CAPZA2 | MET | 7 | 7 | 1 | 1 | 53 | 25 | 21 | 0.16 | 116528244 | 116395409 | tier1 | Out-of-frame | 2982 | NA | 0.3779 |
| KIRP | TCGA-A4-A5Y0-01A | TCGA-A4-A5Y0 | CFLAR|AGBL5 | CFLAR | AGBL5 | 2 | 2 | 1 | 1 | 40 | 67 | 55 | 0.14 | 201997857 | 27290362 | tier1 | Out-of-frame | 3591 | NA | 0.37304 |
| KIRP | TCGA-5P-A9JU-01A | TCGA-5P-A9JU | CNOT1|SLC38A7 | CNOT1 | SLC38A7 | 16 | 16 | -1 | -1 | 2 | 1 | 1 | 0.029 | 58663632 | 58706147 | tier4 | 5UTR-CDS | 3926 | NA | 0.35769 |
| KIRP | TCGA-G7-6792-01A | TCGA-G7-6792 | CRIM1|HAAO | CRIM1 | HAAO | 2 | 2 | 1 | -1 | 18 | 15 | 15 | 0.26 | 36726490 | 42997722 | tier1 | Out-of-frame | 4221 | NA | 0.35288 |
| KIRP | TCGA-5P-A9JZ-01A | TCGA-5P-A9JZ | DOCK4|NRCAM | DOCK4 | NRCAM | 7 | 7 | -1 | -1 | 4 | 1 | 1 | 1.9 | 111846157 | 107953175 | tier2 | CDS-5UTR | 5038 | NA | 0.36404 |
| KIRP | TCGA-Q2-A5QZ-01A | TCGA-Q2-A5QZ | DPP4|PDK1 | DPP4 | PDK1 | 2 | 2 | -1 | 1 | 56 | 52 | 51 | 1.4 | 162902042 | 173451006 | tier1 | In-frame | 5082 | NA | 0.37085 |
| KIRP | TCGA-MH-A855-01A | TCGA-MH-A855 | EIF5|NOTCH2 | EIF5 | NOTCH2 | 14 | 1 | 1 | -1 | 7 | 11 | 10 | 0.055 | 103800934 | 120465069 | tier1 | 5UTR-CDS | 5484 | NA | 0.38648 |
| KIRP | TCGA-2Z-A9JJ-01A | TCGA-2Z-A9JJ | EML4|ALK | EML4 | ALK | 2 | 2 | 1 | -1 | 28 | 15 | 11 | 0.35 | 42472827 | 29446394 | tier1 | In-frame | 5558 | NA | 0.38609 |
| KIRP | TCGA-B9-5156-01A | TCGA-B9-5156 | ENO1|RFWD2 | ENO1 | RFWD2 | 1 | 1 | -1 | -1 | 2 | 9 | 7 | 0.67 | 8921061 | 176129420 | tier3 | NA | 5587 | NA | 0.3738 |
| KIRP | TCGA-BQ-7061-01A | TCGA-BQ-7061 | ENO1|SNW1 | ENO1 | SNW1 | 1 | 14 | -1 | -1 | 3 | 4 | 1 | 1.7 | 8921061 | 78189203 | tier4 | 3UTR-CDS | 5590 | NA | 0.37197 |
| KIRP | TCGA-A4-7287-01A | TCGA-A4-7287 | FGFR3|TACC3 | FGFR3 | TACC3 | 4 | 4 | 1 | 1 | 2190 | 2597 | 2299 | 0.12 | 1808661 | 1741429 | tier1 | In-frame | 6489 | NA | 0.38077 |
|
Showing page 123 |
first page | previous page | next page | last page |
Copyright © 2020 University of Pennsylvania. All Rights Reserved.