Transcript Fusion
The transcript fusion data of TCGA were retrieved from the TumorFusions database.
List of the transcript fusions of the GESPs in each cancer type
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| Cancer Type | TCGA_barcode | Patient | Fusion_transcript | Gene_A | Gene_B | Chr_A | Chr_B | Strand_A | Strand_B | #_Discordant_Pairs | #_JSR | #_perfect_JSR | Evalue | Junction_A | Junction_B | Tier | Frame | TN | WGS_validation | Centrality |
| KIRC | TCGA-B0-4690-01A | TCGA-B0-4690 | SEMA4B|WDR93 | SEMA4B | WDR93 | 15 | 15 | 1 | 1 | 3 | 1 | 1 | 0.33 | 90728313 | 90255257 | tier2 | 5UTR-CDS | 15556 | NA | 0 |
| KIRC | TCGA-BP-5202-01A | TCGA-BP-5202 | SERINC5|ZFYVE16 | SERINC5 | ZFYVE16 | 5 | 5 | -1 | 1 | 6 | 6 | 4 | 0.46 | 79498705 | 79723311 | tier1 | CDS-5UTR | 15646 | NA | 0 |
| KIRC | TCGA-BP-4983-01A | TCGA-BP-4983 | SKAP1|DNAH17 | SKAP1 | DNAH17 | 17 | 17 | -1 | -1 | 3 | 6 | 3 | 0.77 | 46423267 | 76481115 | tier1 | In-frame | 15969 | NA | 0 |
| KIRC | TCGA-A3-3328-01A | TCGA-A3-3328 | SLC23A2|TMX4 | SLC23A2 | TMX4 | 20 | 20 | -1 | -1 | 16 | 11 | 9 | 1.5 | 4951439 | 7982188 | tier1 | 5UTR-CDS | 16080 | NA | 0 |
| KIRC | TCGA-CJ-5680-01A | TCGA-CJ-5680 | SLC2A13|TERT | SLC2A13 | TERT | 12 | 5 | -1 | -1 | 2 | 2 | 2 | 0.29 | 40345059 | 1282739 | tier2 | Out-of-frame | 16135 | NA | 0 |
| KIRC | TCGA-B8-4143-01A | TCGA-B8-4143 | SLC36A1|TTC37 | SLC36A1 | TTC37 | 5 | 5 | 1 | -1 | 3 | 2 | 1 | 1.2 | 150859050 | 94803693 | tier2 | Out-of-frame | 16170 | NA | 0 |
| KIRC | TCGA-AS-3777-01A | TCGA-AS-3777 | SLCO2B1|HNF4A | SLCO2B1 | HNF4A | 11 | 20 | 1 | 1 | 6 | 9 | 6 | 0.15 | 74870949 | 43034698 | tier1 | 5UTR-CDS | 16309 | NA | 0 |
| KIRC | TCGA-B0-5097-01A | TCGA-B0-5097 | SRRT|TRIP6 | SRRT | TRIP6 | 7 | 7 | 1 | 1 | 12 | 4 | 4 | 0.2 | 100473333 | 100470246 | tier1 | In-frame | 16890 | NA | 0 |
| KIRC | TCGA-CJ-6030-01A | TCGA-CJ-6030 | TEAD4|TULP3 | TEAD4 | TULP3 | 12 | 12 | 1 | 1 | 4 | 5 | 5 | 2.2 | 3121398 | 3018695 | tier1 | 5UTR-CDS | 17644 | NA | 0 |
| KIRC | TCGA-A3-3374-01A | TCGA-A3-3374 | TJP1|TYK2 | TJP1 | TYK2 | 15 | 19 | -1 | -1 | 2 | 1 | 1 | 0.35 | 29992356 | 10491352 | tier3 | 3UTR-5UTR | 17840 | NA | 0 |
| KIRC | TCGA-CJ-6032-01A | TCGA-CJ-6032 | TM4SF1|DDX27 | TM4SF1 | DDX27 | 3 | 20 | -1 | 1 | 2 | 3 | 3 | 0.084 | 149086810 | 47849303 | tier4 | NA | 17867 | NA | 0 |
| KIRC | TCGA-B0-4836-01A | TCGA-B0-4836 | TMEM63B|MRPL14 | TMEM63B | MRPL14 | 6 | 6 | 1 | -1 | 14 | 9 | 9 | 0.39 | 44122182 | 44084366 | tier1 | CDS-5UTR | 18043 | NA | 0 |
| KIRC | TCGA-A3-3313-01A | TCGA-A3-3313 | TRERF1|OR2H1 | TRERF1 | OR2H1 | 6 | 6 | -1 | 1 | 3 | 2 | 2 | 0.068 | 42418915 | 29426231 | tier1 | 5UTR-5UTR | 18591 | NA | 0 |
| KIRC | TCGA-EU-5906-01A | TCGA-EU-5906 | TRIT1|MFSD2A | TRIT1 | MFSD2A | 1 | 1 | -1 | 1 | 26 | 26 | 23 | 2 | 40348990 | 40422759 | tier4 | In-frame | 18697 | NA | 0 |
| KIRC | TCGA-BP-4963-01A | TCGA-BP-4963 | TRPC1|PTPRG | TRPC1 | PTPRG | 3 | 3 | 1 | 1 | 2 | 1 | 1 | 1.4 | 142467302 | 61734552 | tier4 | Out-of-frame | 18717 | NA | 0 |
| KIRC | TCGA-B0-5691-01A | TCGA-B0-5691 | TSPAN1|EIF2AK2 | TSPAN1 | EIF2AK2 | 1 | 2 | 1 | -1 | 2 | 2 | 1 | 0.58 | 46651630 | 37342384 | tier3 | NA | 18782 | NA | 0 |
| KIRC | TCGA-BP-4983-01A | TCGA-BP-4983 | UNK|PRKCA | UNK | PRKCA | 17 | 17 | 1 | 1 | 15 | 1 | 1 | 0.23 | 73781065 | 64492319 | tier3 | Out-of-frame | 19264 | NA | 0 |
| KIRC | TCGA-A3-3363-01A | TCGA-A3-3363 | WDR60|VIPR2 | WDR60 | VIPR2 | 7 | 7 | 1 | -1 | 14 | 29 | 24 | 0.043 | 158684024 | 158851269 | tier1 | In-frame | 19795 | non-validated | 0 |
| KIRC | TCGA-BP-4346-01A | TCGA-BP-4346 | ZBTB20|CD200R1 | ZBTB20 | CD200R1 | 3 | 3 | -1 | -1 | 19 | 11 | 11 | 0.14 | 114519948 | 112666771 | tier1 | 5UTR-CDS | 20079 | NA | 0 |
| KIRC | TCGA-B0-5096-01A | TCGA-B0-5096 | ZBTB20|LSAMP | ZBTB20 | LSAMP | 3 | 3 | -1 | -1 | 3 | 2 | 1 | 0.81 | 114412375 | 115529261 | tier4 | 5UTR-CDS | 20086 | NA | 0 |
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