Transcript Fusion
The transcript fusion data of TCGA were retrieved from the TumorFusions database.
List of the transcript fusions of the GESPs in each cancer type
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| Cancer Type | TCGA_barcode | Patient | Fusion_transcript | Gene_A | Gene_B | Chr_A | Chr_B | Strand_A | Strand_B | #_Discordant_Pairs | #_JSR | #_perfect_JSR | Evalue | Junction_A | Junction_B | Tier | Frame | TN | WGS_validation | Centrality |
| KIRC | TCGA-CJ-4886-01A | TCGA-CJ-4886 | MCC|SLC9A9 | MCC | SLC9A9 | 5 | 3 | -1 | -1 | 3 | 1 | 1 | 3.7 | 112630026 | 143551063 | tier2 | Out-of-frame | 10080 | NA | 0.3688 |
| KIRC | TCGA-BP-4983-01A | TCGA-BP-4983 | MGAT5B|VMP1 | MGAT5B | VMP1 | 17 | 17 | 1 | 1 | 36 | 23 | 20 | 1.1 | 74878380 | 57842332 | tier1 | Out-of-frame | 10320 | NA | 0.32931 |
| KIRC | TCGA-B8-5164-01A | TCGA-B8-5164 | MTF1|SERINC2 | MTF1 | SERINC2 | 1 | 1 | -1 | 1 | 10 | 11 | 11 | 0.26 | 38322923 | 31905814 | tier1 | Out-of-frame | 10784 | NA | 0.35243 |
| KIRC | TCGA-A3-A6NL-01A | TCGA-A3-A6NL | MYH9|CD74 | MYH9 | CD74 | 22 | 5 | -1 | -1 | 2 | 1 | 1 | 0.003 | 36685235 | 149792314 | tier3 | NA | 10901 | NA | 0.38365 |
| KIRC | TCGA-BP-4781-01A | TCGA-BP-4781 | MYLK|NXPH1 | MYLK | NXPH1 | 3 | 7 | -1 | 1 | 8 | 4 | 3 | 1 | 123367818 | 8790638 | tier1 | Out-of-frame | 10932 | non-validated | 0.38773 |
| KIRC | TCGA-BP-4968-01A | TCGA-BP-4968 | MYLK|SIAE | MYLK | SIAE | 3 | 11 | -1 | -1 | 2 | 3 | 2 | 0.57 | 123331145 | 124543777 | tier3 | 3UTR-5UTR | 10935 | non-validated | 0.38698 |
| KIRC | TCGA-A3-3311-01A | TCGA-A3-3311 | NFKBIE|SLC29A1 | NFKBIE | SLC29A1 | 6 | 6 | -1 | 1 | 63 | 35 | 31 | 0.22 | 44227780 | 44194997 | tier1 | CDS-5UTR | 11514 | NA | 0.37216 |
| KIRC | TCGA-CZ-5469-01A | TCGA-CZ-5469 | P4HB|SNW1 | P4HB | SNW1 | 17 | 14 | -1 | -1 | 2 | 7 | 2 | 0.69 | 79801037 | 78189203 | tier4 | 3UTR-CDS | 12153 | NA | 0.36905 |
| KIRC | TCGA-B8-5553-01A | TCGA-B8-5553 | PCM1|NRG1 | PCM1 | NRG1 | 8 | 8 | 1 | 1 | 11 | 6 | 5 | 0.99 | 17782289 | 32611890 | tier1 | 5UTR-CDS | 12406 | NA | 0.37805 |
| KIRC | TCGA-B8-A7U6-01A | TCGA-B8-A7U6 | PDZRN3|ADAM19 | PDZRN3 | ADAM19 | 3 | 5 | -1 | -1 | 2 | 3 | 3 | 0.98 | 73651505 | 156997988 | tier3 | Out-of-frame | 12587 | NA | 0.37684 |
| KIRC | TCGA-A3-3313-01A | TCGA-A3-3313 | PKHD1|RCAN2 | PKHD1 | RCAN2 | 6 | 6 | -1 | -1 | 58 | 38 | 33 | 0.55 | 51695659 | 46216633 | tier1 | Out-of-frame | 12906 | NA | 0.34906 |
| KIRC | TCGA-CJ-5681-01A | TCGA-CJ-5681 | PLAC1|DSCAM | PLAC1 | DSCAM | X | 21 | -1 | -1 | 9 | 12 | 12 | 1.2 | 133736081 | 41561165 | tier1 | 5UTR-CDS | 12943 | validated | 0.37442 |
| KIRC | TCGA-A3-3374-01A | TCGA-A3-3374 | PLD3|NCALD | PLD3 | NCALD | 19 | 8 | 1 | -1 | 2 | 29 | 16 | 0.084 | 40884390 | 102813898 | tier3 | 3UTR-5UTR | 12981 | NA | 0.36361 |
| KIRC | TCGA-AK-3444-01A | TCGA-AK-3444 | PLVAP|CLCN3 | PLVAP | CLCN3 | 19 | 4 | -1 | 1 | 2 | 34 | 18 | 6.6 | 17462264 | 170623929 | tier3 | NA | 13052 | NA | 0.36581 |
| KIRC | TCGA-BP-4986-01A | TCGA-BP-4986 | PRDM6|NIPAL4 | PRDM6 | NIPAL4 | 5 | 5 | 1 | 1 | 6 | 5 | 5 | 4.3 | 122495332 | 156890102 | tier1 | In-frame | 13503 | NA | 0.27805 |
| KIRC | TCGA-B0-4698-01A | TCGA-B0-4698 | PTPRU|NOS1AP | PTPRU | NOS1AP | 1 | 1 | 1 | 1 | 3 | 6 | 6 | 0.091 | 29618538 | 162124195 | tier1 | Out-of-frame | 13924 | NA | 0 |
| KIRC | TCGA-A3-3387-01A | TCGA-A3-3387 | RHOA|NICN1 | RHOA | NICN1 | 3 | 3 | -1 | -1 | 38 | 26 | 25 | 0.66 | 49449253 | 49463861 | tier1 | 5UTR-CDS | 14650 | non-validated | 0 |
| KIRC | TCGA-B4-5378-01A | TCGA-B4-5378 | RHOB|EIF2AK2 | RHOB | EIF2AK2 | 2 | 2 | 1 | -1 | 2 | 5 | 3 | 0.85 | 20649200 | 37342384 | tier3 | NA | 14653 | NA | 0 |
| KIRC | TCGA-CJ-5681-01A | TCGA-CJ-5681 | RP11-47I22.3|PRKCH | RP11-47I22.3 | PRKCH | 14 | 14 | 1 | 1 | 3 | 2 | 2 | 0.58 | 62037478 | 61909829 | tier1 | Out-of-frame | 14936 | validated | 0 |
| KIRC | TCGA-B0-5691-01A | TCGA-B0-5691 | SDC4|EIF2AK2 | SDC4 | EIF2AK2 | 20 | 2 | -1 | -1 | 2 | 3 | 3 | 0.022 | 43953928 | 37342384 | tier3 | NA | 15468 | NA | 0 |
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