Transcript Fusion
The transcript fusion data of TCGA were retrieved from the TumorFusions database.
List of the transcript fusions of the GESPs in each cancer type
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| Cancer Type | TCGA_barcode | Patient | Fusion_transcript | Gene_A | Gene_B | Chr_A | Chr_B | Strand_A | Strand_B | #_Discordant_Pairs | #_JSR | #_perfect_JSR | Evalue | Junction_A | Junction_B | Tier | Frame | TN | WGS_validation | Centrality |
| KIRC | TCGA-B0-4811-01A | TCGA-B0-4811 | EPB41L1|PHF20 | EPB41L1 | PHF20 | 20 | 20 | 1 | 1 | 2 | 2 | 2 | 0.042 | 34713449 | 34430495 | tier2 | Out-of-frame | 5643 | NA | 0.37244 |
| KIRC | TCGA-B0-4688-01A | TCGA-B0-4688 | FBXO18|ITGA8 | FBXO18 | ITGA8 | 10 | 10 | 1 | -1 | 85 | 75 | 70 | 0.89 | 5960441 | 15648421 | tier1 | Out-of-frame | 6342 | NA | 0.37067 |
| KIRC | TCGA-BP-4969-01A | TCGA-BP-4969 | FHIT|SYNPR | FHIT | SYNPR | 3 | 3 | -1 | 1 | 11 | 1 | 1 | 0.55 | 61186291 | 63466508 | tier4 | 5UTR-CDS | 6526 | NA | 0.36647 |
| KIRC | TCGA-CJ-5681-01A | TCGA-CJ-5681 | GABRA3|DIAPH2 | GABRA3 | DIAPH2 | X | X | -1 | 1 | 39 | 3 | 3 | 1.2 | 151376473 | 96684649 | tier1 | In-frame | 6900 | non-validated | 0.35611 |
| KIRC | TCGA-B0-4706-01A | TCGA-B0-4706 | GPC6|GPC5 | GPC6 | GPC5 | 13 | 13 | 1 | 1 | 10 | 11 | 11 | 3.3 | 93879869 | 93518535 | tier1 | In-frame | 7328 | NA | 0.34681 |
| KIRC | TCGA-CJ-5681-01A | TCGA-CJ-5681 | HIST1H2AC|LHFPL2 | HIST1H2AC | LHFPL2 | 6 | 5 | 1 | -1 | 24 | 31 | 31 | 0.29 | 26124977 | 77860694 | tier1 | 3UTR-5UTR | 7787 | validated | 0.3497 |
| KIRC | TCGA-B0-5706-01A | TCGA-B0-5706 | HLA-B|CCT5 | HLA-B | CCT5 | 6 | 5 | -1 | 1 | 2 | 12 | 5 | 2.5 | 31321649 | 10250033 | tier3 | 3UTR-5UTR | 7816 | NA | 0.37757 |
| KIRC | TCGA-CZ-5455-01A | TCGA-CZ-5455 | HLA-B|CCT5 | HLA-B | CCT5 | 6 | 5 | -1 | 1 | 2 | 4 | 1 | 2.5 | 31321649 | 10250033 | tier3 | 3UTR-5UTR | 7817 | NA | 0.37757 |
| KIRC | TCGA-AK-3444-01A | TCGA-AK-3444 | HLA-B|CLCN3 | HLA-B | CLCN3 | 6 | 4 | -1 | 1 | 2 | 10 | 2 | 1.3 | 31321649 | 170623929 | tier3 | NA | 7820 | NA | 0.37471 |
| KIRC | TCGA-CZ-5982-01A | TCGA-CZ-5982 | HS3ST1|CNTN5 | HS3ST1 | CNTN5 | 4 | 11 | -1 | 1 | 12 | 8 | 6 | 1.8 | 11430323 | 99426876 | tier1 | 5UTR-5UTR | 7964 | NA | 0.35063 |
| KIRC | TCGA-CZ-4857-01A | TCGA-CZ-4857 | IL1R1|MAP4K4 | IL1R1 | MAP4K4 | 2 | 2 | 1 | 1 | 8 | 5 | 5 | 0.23 | 102721332 | 102499013 | tier1 | 5UTR-CDS | 8169 | NA | 0.38101 |
| KIRC | TCGA-BP-4968-01A | TCGA-BP-4968 | IL27RA|RLN3 | IL27RA | RLN3 | 19 | 19 | 1 | 1 | 3 | 1 | 1 | 0.019 | 14153601 | 14141522 | tier4 | Out-of-frame | 8185 | non-validated | 0.36098 |
| KIRC | TCGA-BP-5195-01A | TCGA-BP-5195 | ITPR1|SETMAR | ITPR1 | SETMAR | 3 | 3 | 1 | 1 | 16 | 6 | 6 | 0.021 | 4695570 | 4354582 | tier1 | In-frame | 8448 | NA | 0.37734 |
| KIRC | TCGA-BP-4983-01A | TCGA-BP-4983 | KANK1|TPD52L3 | KANK1 | TPD52L3 | 9 | 9 | 1 | 1 | 47 | 30 | 26 | 0.63 | 540667 | 6330182 | tier1 | 5UTR-CDS | 8518 | NA | 0.35464 |
| KIRC | TCGA-BP-4983-01A | TCGA-BP-4983 | KANK1|UHRF2 | KANK1 | UHRF2 | 9 | 9 | 1 | 1 | 9 | 15 | 15 | 0.24 | 540667 | 6420912 | tier1 | 5UTR-CDS | 8519 | NA | 0.36586 |
| KIRC | TCGA-DV-5576-01A | TCGA-DV-5576 | KIAA0319L|GOLGA1 | KIAA0319L | GOLGA1 | 1 | 9 | -1 | -1 | 44 | 27 | 25 | 0.019 | 35972213 | 127652757 | tier1 | In-frame | 8775 | NA | 0.34599 |
| KIRC | TCGA-B0-4841-01A | TCGA-B0-4841 | KPNA1|CD86 | KPNA1 | CD86 | 3 | 3 | -1 | 1 | 5 | 13 | 13 | 0.66 | 122233604 | 121836895 | tier1 | 5UTR-CDS | 9092 | NA | 0.37871 |
| KIRC | TCGA-CJ-5681-01A | TCGA-CJ-5681 | LHFPL2|HIST1H2AC | LHFPL2 | HIST1H2AC | 5 | 6 | -1 | 1 | 38 | 24 | 24 | 0.29 | 77928087 | 26138282 | tier1 | 5UTR-3UTR | 9322 | validated | 0.3497 |
| KIRC | TCGA-BP-5201-01A | TCGA-BP-5201 | LPHN3|AMTN | LPHN3 | AMTN | 4 | 4 | 1 | 1 | 7 | 4 | 4 | 3 | 62679607 | 71389585 | tier1 | Out-of-frame | 9446 | NA | 0.3501 |
| KIRC | TCGA-B0-5713-01A | TCGA-B0-5713 | LRIG1|SLC26A7 | LRIG1 | SLC26A7 | 3 | 8 | -1 | 1 | 5 | 2 | 2 | 0.99 | 66444464 | 92261767 | tier1 | CDS-5UTR | 9497 | NA | 0.34875 |
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