Transcript Fusion
The transcript fusion data of TCGA were retrieved from the TumorFusions database.
List of the transcript fusions of the GESPs in each cancer type
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| Cancer Type | TCGA_barcode | Patient | Fusion_transcript | Gene_A | Gene_B | Chr_A | Chr_B | Strand_A | Strand_B | #_Discordant_Pairs | #_JSR | #_perfect_JSR | Evalue | Junction_A | Junction_B | Tier | Frame | TN | WGS_validation | Centrality |
| KIRC | TCGA-CJ-5681-01A | TCGA-CJ-5681 | BACH1|ODZ1 | BACH1 | ODZ1 | 21 | X | 1 | -1 | 29 | 25 | 23 | 0.76 | 30566581 | 123775841 | tier1 | NA | 1896 | non-validated | 0.37034 |
| KIRC | TCGA-B0-4698-01A | TCGA-B0-4698 | BMPR1B|DDAH1 | BMPR1B | DDAH1 | 4 | 1 | 1 | -1 | 3 | 4 | 4 | 0.8 | 96025718 | 85824530 | tier1 | Out-of-frame | 2134 | NA | 0.37797 |
| KIRC | TCGA-A3-3313-01A | TCGA-A3-3313 | BTN2A1|HIST1H2BC | BTN2A1 | HIST1H2BC | 6 | 6 | 1 | -1 | 6 | 4 | 4 | 0.07 | 26463753 | 26115363 | tier1 | CDS-3UTR | 2280 | NA | 0.35676 |
| KIRC | TCGA-CJ-5681-01A | TCGA-CJ-5681 | C21orf90|GABRA3 | C21orf90 | GABRA3 | 21 | X | 1 | -1 | 24 | 25 | 22 | 0.32 | 45937718 | 151453207 | tier1 | Out-of-frame | 2664 | non-validated | 0 |
| KIRC | TCGA-A3-3313-01A | TCGA-A3-3313 | C6orf138|CD2AP | C6orf138 | CD2AP | 6 | 6 | -1 | 1 | 57 | 43 | 40 | 0.62 | 47976370 | 47471016 | tier1 | In-frame | 2750 | NA | 0 |
| KIRC | TCGA-AS-3777-01A | TCGA-AS-3777 | CALD1|CGN | CALD1 | CGN | 7 | 1 | 1 | 1 | 9 | 6 | 6 | 0.24 | 134576424 | 151490982 | tier1 | CDS-5UTR | 2901 | NA | 0.37014 |
| KIRC | TCGA-B0-4688-01A | TCGA-B0-4688 | CCNY|PTPRD | CCNY | PTPRD | 10 | 9 | 1 | -1 | 24 | 10 | 6 | 0.034 | 35819171 | 10033790 | tier1 | CDS-5UTR | 3238 | NA | 0.36809 |
| KIRC | TCGA-BP-5199-01A | TCGA-BP-5199 | CD63|PLAT | CD63 | PLAT | 12 | 8 | -1 | -1 | 2 | 6 | 5 | 0.41 | 56119254 | 42051245 | tier3 | NA | 3287 | NA | 0.37747 |
| KIRC | TCGA-BP-5175-01A | TCGA-BP-5175 | CLPTM1L|CDHR2 | CLPTM1L | CDHR2 | 5 | 5 | -1 | 1 | 40 | 25 | 23 | 1.4 | 1341786 | 176008344 | tier1 | In-frame | 3846 | NA | 0.33839 |
| KIRC | TCGA-BP-4991-01A | TCGA-BP-4991 | CLPTM1L|PDCD6 | CLPTM1L | PDCD6 | 5 | 5 | -1 | 1 | 10 | 7 | 6 | 1.2 | 1320731 | 304292 | tier1 | Out-of-frame | 3847 | NA | 0.36572 |
| KIRC | TCGA-AS-3777-01A | TCGA-AS-3777 | CPM|GOLT1B | CPM | GOLT1B | 12 | 12 | -1 | 1 | 21 | 17 | 17 | 0.71 | 69326458 | 21659819 | tier1 | In-frame | 4128 | NA | 0.34374 |
| KIRC | TCGA-AS-3777-01A | TCGA-AS-3777 | CPT1A|ANPEP | CPT1A | ANPEP | 11 | 15 | -1 | -1 | 3 | 26 | 25 | 0.2 | 68609243 | 90328732 | tier1 | 5UTR-CDS | 4166 | NA | 0.35652 |
| KIRC | TCGA-BP-4774-01A | TCGA-BP-4774 | CRIM1|EEF1B2 | CRIM1 | EEF1B2 | 2 | 2 | 1 | 1 | 2 | 2 | 2 | 0.23 | 36669878 | 207024637 | tier3 | CDS-5UTR | 4220 | NA | 0.3648 |
| KIRC | TCGA-CJ-5681-01A | TCGA-CJ-5681 | CRIM1|TACR1 | CRIM1 | TACR1 | 2 | 2 | 1 | -1 | 35 | 41 | 38 | 0.14 | 36749456 | 75347894 | tier1 | Out-of-frame | 4222 | non-validated | 0.37133 |
| KIRC | TCGA-B0-4945-01A | TCGA-B0-4945 | CTIF|GRM4 | CTIF | GRM4 | 18 | 6 | 1 | -1 | 8 | 5 | 5 | 0.066 | 46197115 | 34059876 | tier1 | In-frame | 4339 | NA | 0.36362 |
| KIRC | TCGA-BP-4962-01A | TCGA-BP-4962 | CTNND1|TMX2 | CTNND1 | TMX2 | 11 | 11 | 1 | 1 | 6 | 4 | 3 | 0.009 | 57529518 | 57505080 | tier1 | 5UTR-CDS | 4376 | NA | 0.3799 |
| KIRC | TCGA-CJ-5681-01A | TCGA-CJ-5681 | CXADR|MTCP1NB | CXADR | MTCP1NB | 21 | X | 1 | -1 | 5 | 7 | 7 | 0.24 | 18885490 | 154292308 | tier1 | CDS-5UTR | 4473 | non-validated | 0.36377 |
| KIRC | TCGA-BP-4983-01A | TCGA-BP-4983 | DLG4|MARCH10 | DLG4 | MARCH10 | 17 | 17 | -1 | -1 | 85 | 45 | 42 | 1.8 | 7120437 | 60879113 | tier1 | CDS-5UTR | 4887 | NA | 0 |
| KIRC | TCGA-B0-4844-01A | TCGA-B0-4844 | DYM|SLC14A2 | DYM | SLC14A2 | 18 | 18 | -1 | 1 | 7 | 6 | 6 | 1.4 | 46904937 | 43246102 | tier1 | In-frame | 5199 | NA | 0.34167 |
| KIRC | TCGA-BP-4983-01A | TCGA-BP-4983 | ENDOV|TMEM104 | ENDOV | TMEM104 | 17 | 17 | 1 | 1 | 9 | 15 | 14 | 0.14 | 78397432 | 72832066 | tier1 | Out-of-frame | 5583 | NA | 0.32724 |
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