TCSA Transcript fusion

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Transcript Fusion

The transcript fusion data of TCGA were retrieved from the TumorFusions database.

List of the transcript fusions of the GESPs in each cancer type

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Cancer Type	TCGA_barcode	Patient	Fusion_transcript	Gene_A	Gene_B	Chr_A	Chr_B	Strand_A	Strand_B	#_Discordant_Pairs	#_JSR	#_perfect_JSR	Evalue	Junction_A	Junction_B	Tier	Frame	TN	WGS_validation	Centrality
KICH	TCGA-KL-8325-01A	TCGA-KL-8325	APLP2\|C7	APLP2	C7	11	5	1	1	2	24	19	0.56	130014699	40954982	tier4	NA	1122	non-validated	0.3763
KICH	TCGA-KO-8403-01A	TCGA-KO-8403	APLP2\|C7	APLP2	C7	11	5	1	1	2	155	133	0.56	130014699	40954982	tier3	NA	1123	NA	0.3763
KICH	TCGA-KL-8339-01A	TCGA-KL-8339	BSG\|NCALD	BSG	NCALD	19	8	1	-1	2	6	2	0.27	583492	102813898	tier3	3UTR-5UTR	2248	NA	0.37052
KICH	TCGA-KL-8328-01A	TCGA-KL-8328	C20orf194\|ADRA1D	C20orf194	ADRA1D	20	20	-1	-1	6	3	3	0.054	3388122	4202777	tier1	Out-of-frame	2640	validated	0
KICH	TCGA-KL-8339-01A	TCGA-KL-8339	CTDSPL\|ITGA9	CTDSPL	ITGA9	3	3	1	1	6	10	10	0.37	37903769	37774203	tier1	Out-of-frame	4331	NA	0.36998
KICH	TCGA-KN-8423-01A	TCGA-KN-8423	GNAS\|ARFGEF2	GNAS	ARFGEF2	20	20	1	1	2	47	33	4.1	57486241	47615777	tier4	3UTR-CDS	7181	NA	0.37779
KICH	TCGA-KN-8435-01A	TCGA-KN-8435	GNAS\|CLIP1	GNAS	CLIP1	20	12	1	-1	2	76	12	0.78	57486241	122819252	tier4	3UTR-CDS	7186	non-validated	0.37643
KICH	TCGA-KM-8442-01A	TCGA-KM-8442	GNAS\|FOXP1	GNAS	FOXP1	20	3	1	-1	2	57	44	3.3	57486241	71007472	tier3	NA	7191	non-validated	0.37906
KICH	TCGA-KM-8443-01A	TCGA-KM-8443	LNPEP\|GPBP1	LNPEP	GPBP1	5	5	1	1	31	54	47	0.047	96271878	56545281	tier1	Out-of-frame	9415	validated	0.36855
KICH	TCGA-KL-8341-01A	TCGA-KL-8341	LRP12\|CCL28	LRP12	CCL28	8	5	-1	-1	6	5	5	1.6	105544135	43388578	tier1	In-frame	9513	non-validated	0.36449
KICH	TCGA-KL-8339-01A	TCGA-KL-8339	MMP14\|RBM23	MMP14	RBM23	14	14	1	-1	24	12	10	1.2	23306134	23371591	tier1	In-frame	10545	NA	0.37133
KICH	TCGA-KM-8438-01A	TCGA-KM-8438	MYH9\|DNASE1	MYH9	DNASE1	22	16	-1	1	2	6	1	0.16	36697580	3704962	tier4	CDS-5UTR	10903	non-validated	0.38145
KICH	TCGA-KL-8325-01A	TCGA-KL-8325	RHCG\|C7	RHCG	C7	15	5	-1	1	2	67	56	0.29	90014642	40954982	tier3	NA	14647	non-validated	0
KICH	TCGA-KL-8341-01A	TCGA-KL-8341	STXBP5L\|EPHA3	STXBP5L	EPHA3	3	3	1	1	2	4	4	0.16	121100379	89444987	tier2	In-frame	17152	validated	0
KIRC	TCGA-CW-5584-01A	TCGA-CW-5584	ABCC3\|BCAN	ABCC3	BCAN	17	1	1	1	8	9	9	0.18	48751019	156627467	tier1	In-frame	61	NA	0.36824
KIRC	TCGA-AS-3777-01A	TCGA-AS-3777	ADAM15\|DCST1	ADAM15	DCST1	1	1	1	1	17	17	17	0.02	155025253	155006448	tier1	CDS-5UTR	408	NA	0.37305
KIRC	TCGA-A3-3319-01A	TCGA-A3-3319	APLP2\|PLEKHA5	APLP2	PLEKHA5	11	12	1	1	2	36	32	0.86	130014699	19441012	tier2	NA	1130	NA	0.37446
KIRC	TCGA-B0-5691-01A	TCGA-B0-5691	AQP2\|FOXP1	AQP2	FOXP1	12	3	1	-1	2	1	1	1.1	50352664	71007472	tier3	NA	1169	NA	0.3579
KIRC	TCGA-BP-5173-01A	TCGA-BP-5173	ATP11A\|C13orf35	ATP11A	C13orf35	13	13	1	1	2	2	2	0.2	113344769	113337588	tier3	Out-of-frame	1665	NA	0
KIRC	TCGA-CW-5581-01A	TCGA-CW-5581	ATP8A1\|LDB2	ATP8A1	LDB2	4	4	-1	-1	6	5	5	0.063	42658842	16760883	tier1	Out-of-frame	1766	NA	0.35145

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